Os01g0785400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GH3 auxin-responsive promoter family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0785400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : GH3 auxin-responsive promoter family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.55 | 0.442 | 2.88 | -0.334 | 0.162 | -0.457 | -0.545 | 2.48 | 0.0307 | 10.6 | 1 | 15 | -- | -- |
| 94.06 | 0.452 | 2.86 | -0.296 | 0.187 | -0.287 | -0.44 | -- | 0.058 | 10.1 | 1.1 | 14 | -- | -- |
| 89.73 | 0.441 | 2.88 | -0.353 | 0.167 | -0.473 | -- | 2.35 | 0.0312 | 11.3 | 1.022 | 14 | -- | -- |
| 94.73 | 0.453 | 2.86 | -0.259 | 0.174 | -0.301 | -- | -- | 0.0558 | 10.6 | 1.032 | 14 | -- | -- |
| 91.45 | 0.445 | 2.89 | -0.355 | -- | -0.443 | -- | 2.38 | 0.0293 | -- | 1.025 | 14 | -- | -- |
| 95.64 | 0.458 | 2.86 | -0.207 | 0.186 | -- | -0.583 | -- | 0.0522 | 8.58 | -- | -- | -- | -- |
| 96.73 | 0.461 | 2.86 | -0.225 | 0.186 | -- | -- | -- | 0.0525 | 8.86 | -- | -- | -- | -- |
| 96.55 | 0.458 | 2.86 | -0.263 | -- | -0.29 | -- | -- | 0.0549 | -- | 1.049 | 16 | -- | -- |
| 96.46 | 0.457 | 2.85 | -- | 0.175 | -0.267 | -- | -- | 0.0838 | 10.5 | 1.096 | 14 | -- | -- |
| 98.71 | 0.464 | 2.86 | -0.225 | -- | -- | -- | -- | 0.0539 | -- | -- | -- | -- | -- |
| 98.06 | 0.463 | 2.85 | -- | 0.186 | -- | -- | -- | 0.0776 | 8.95 | -- | -- | -- | -- |
| 98.33 | 0.462 | 2.86 | -- | -- | -0.253 | -- | -- | 0.0832 | -- | 1.067 | 14 | -- | -- |
| 100.04 | 0.467 | 2.86 | -- | -- | -- | -- | -- | 0.0788 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.11 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 2 | 80.51 | humidity | 60.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 41 | 80.51 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 81 | 80.53 | humidity | 60.0 | 10 | < th | dose independent | rect. | 10 | 1 |
| 83 | 80.53 | humidity | 60.0 | 90 | < th | dose independent | rect. | 18 | 15 |
| 84 | 80.53 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 86 | 80.53 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 87 | 80.53 | humidity | 60.0 | 30 | < th | dose dependent | rect. | 18 | 17 |
| 259 | 80.62 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 303 | 80.79 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 307 | 80.84 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 332 | 81.05 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 560 | 82.67 | radiation | 40.0 | 10 | > th | dose dependent | sin | 12 | NA |
| 662 | 83.65 | wind | 1.0 | 10 | < th | dose independent | sin | 20 | NA |
| 669 | 83.76 | radiation | 40.0 | 10 | > th | dose independent | rect. | 9 | 1 |
| 799 | 84.11 | wind | 1.0 | 10 | > th | dose independent | sin | 20 | NA |
| 842 | 84.32 | wind | 1.0 | 10 | < th | dose dependent | sin | 21 | NA |
| 844 | 84.34 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 845 | 84.34 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 847 | 84.38 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 848 | 84.38 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 855 | 84.42 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 864 | 84.46 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 866 | 84.46 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 867 | 84.46 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 871 | 84.46 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 873 | 84.46 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 878 | 84.46 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 880 | 84.46 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 881 | 84.46 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 886 | 84.46 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 893 | 84.49 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 918 | 84.54 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 931 | 84.69 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 939 | 84.79 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 942 | 84.92 | wind | 1.0 | 10 | > th | dose independent | sin | 23 | NA |
| 952 | 85.00 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |