Os06g0499500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17).
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Os06g0499500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.17 | 0.231 | 8.8 | -0.539 | 0.43 | -1.22 | -0.428 | -1.15 | -0.0274 | 20.6 | 15.2 | 16 | -- | -- |
| 24.75 | 0.232 | 8.78 | -0.401 | 0.429 | -1.06 | -0.362 | -- | 0.0174 | 20.3 | 19.7 | 13 | -- | -- |
| 24.64 | 0.231 | 8.8 | -0.499 | 0.426 | -1.11 | -- | -0.822 | -0.0174 | 20.7 | 17.09 | 20 | -- | -- |
| 25.06 | 0.233 | 8.78 | -0.394 | 0.434 | -1.02 | -- | -- | 0.00925 | 20.7 | 19.66 | 19 | -- | -- |
| 34.61 | 0.276 | 8.78 | -0.47 | -- | -1.18 | -- | -0.69 | -0.00772 | -- | 17.11 | 12 | -- | -- |
| 40.17 | 0.297 | 8.82 | -0.605 | 0.589 | -- | 0.24 | -- | -0.164 | 23.5 | -- | -- | -- | -- |
| 40.4 | 0.298 | 8.82 | -0.615 | 0.588 | -- | -- | -- | -0.164 | 23.4 | -- | -- | -- | -- |
| 34.97 | 0.275 | 8.77 | -0.376 | -- | -1.12 | -- | -- | 0.0212 | -- | 18.75 | 3 | -- | -- |
| 28.72 | 0.25 | 8.77 | -- | 0.43 | -1.21 | -- | -- | 0.0793 | 20.4 | 18.5 | 20 | -- | -- |
| 62.08 | 0.368 | 8.81 | -0.6 | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
| 50.35 | 0.332 | 8.81 | -- | 0.582 | -- | -- | -- | -0.0959 | 23.3 | -- | -- | -- | -- |
| 38.28 | 0.288 | 8.76 | -- | -- | -1.29 | -- | -- | 0.0759 | -- | 17.2 | 3 | -- | -- |
| 71.56 | 0.395 | 8.79 | -- | -- | -- | -- | -- | -0.0921 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.23 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 7 | 24.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 8 | 24.64 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 9 | 24.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 12 | 24.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 13 | 24.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 16 | 24.78 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 18 | 24.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 23 | 24.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 28 | 25.07 | temperature | 20 | 10 | > th | dose dependent | sin | 21 | NA |
| 37 | 25.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 40 | 25.21 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 44 | 25.24 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 46 | 25.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 50 | 25.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 76 | 25.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 97 | 25.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 100 | 25.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 101 | 25.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 107 | 25.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 118 | 25.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 120 | 25.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 147 | 26.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 153 | 26.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 177 | 26.17 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 204 | 26.32 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 17 |
| 220 | 26.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 221 | 26.45 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 15 |
| 284 | 26.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 373 | 27.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 432 | 27.26 | temperature | 30 | 30 | < th | dose dependent | sin | 20 | NA |
| 636 | 27.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 637 | 27.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |