Os07g0592600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Indole-3-acetic acid-amido synthetase GH3.3 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 3) (AtGH3-3).
FiT-DB / Search/ Help/ Sample detail
|
Os07g0592600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Indole-3-acetic acid-amido synthetase GH3.3 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 3) (AtGH3-3).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 471.06 | 1.02 | 7.01 | 3.87 | 1.33 | 2.51 | -1.48 | -1.58 | 0.675 | 2.97 | 19.5 | 6245 | 4.03 | -- |
| 469.56 | 1.01 | 7.07 | 3.89 | 1.34 | 2.97 | -1.48 | -- | 0.63 | 3.09 | 19 | 7467 | 4.19 | -- |
| 476.96 | 1.02 | 7 | 3.91 | 1.31 | 2.54 | -- | -1.59 | 0.659 | 2.98 | 19.43 | 6254 | 5.64 | -- |
| 476.95 | 1.02 | 7.07 | 3.98 | 1.34 | 3.06 | -- | -- | 0.637 | 3.02 | 18.99 | 7621 | 5.1 | -- |
| 574.97 | 1.12 | 7.01 | 4.02 | -- | 2.74 | -- | -1.35 | 0.71 | -- | 19.47 | 6245 | 6.71 | -- |
| 612.84 | 1.16 | 7.27 | 1.69 | 1.32 | -- | -1.64 | -- | -0.251 | 3.09 | -- | -- | -- | -- |
| 621.74 | 1.17 | 7.26 | 1.72 | 1.31 | -- | -- | -- | -0.241 | 3.07 | -- | -- | -- | -- |
| 576.87 | 1.12 | 7.06 | 4.05 | -- | 3.03 | -- | -- | 0.705 | -- | 19.5 | 7682 | 6.93 | -- |
| 659.53 | 1.2 | 7.25 | -- | 1.04 | 1.06 | -- | -- | -0.218 | 4.13 | 22.53 | 5745 | 5.15 | -- |
| 720.11 | 1.25 | 7.26 | 1.78 | -- | -- | -- | -- | -0.207 | -- | -- | -- | -- | -- |
| 699.71 | 1.24 | 7.31 | -- | 1.35 | -- | -- | -- | -0.433 | 3.08 | -- | -- | -- | -- |
| 699.71 | 1.23 | 7.31 | -- | -- | 1.35 | -- | -- | -0.433 | -- | 44.66 | 5955 | 4.55 | -- |
| 803.3 | 1.32 | 7.31 | -- | -- | -- | -- | -- | -0.404 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 462.45 | temperature | 15 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 462.95 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 4 | 463.11 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 28 | 464.12 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 34 | 464.52 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 38 | 464.65 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 43 | 464.99 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 48 | 465.16 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 56 | 465.19 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 61 | 465.22 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 71 | 465.23 | radiation | 30 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 83 | 465.43 | humidity | 50 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 90 | 465.70 | humidity | 50 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 91 | 465.74 | radiation | 30 | 43200 | < th | dose independent | sin | 9 | NA |
| 95 | 465.84 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 134 | 466.35 | humidity | 50 | 43200 | < th | dose dependent | rect. | 21 | 15 |
| 136 | 466.38 | temperature | 15 | 43200 | < th | dose dependent | sin | 9 | NA |
| 184 | 466.59 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 190 | 466.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 200 | 466.73 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 201 | 466.74 | radiation | 30 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 216 | 466.94 | radiation | 30 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 217 | 466.96 | radiation | 30 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 223 | 466.98 | radiation | 30 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 224 | 466.98 | radiation | 30 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 236 | 467.09 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 243 | 467.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 274 | 467.38 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 278 | 467.41 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 281 | 467.42 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 293 | 467.53 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 298 | 467.59 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 299 | 467.60 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 321 | 467.75 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 336 | 467.87 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 373 | 468.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 15 |
| 381 | 468.16 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 12 |
| 385 | 468.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 404 | 468.24 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 420 | 468.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 421 | 468.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 464 | 468.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 493 | 468.69 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 513 | 468.80 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 558 | 469.09 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 575 | 469.23 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 636 | 469.34 | radiation | 1 | 43200 | < th | dose dependent | sin | 8 | NA |
| 725 | 469.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 731 | 469.69 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 741 | 469.72 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 758 | 469.78 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 763 | 469.79 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 769 | 469.81 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 19 |
| 778 | 469.85 | humidity | 50 | 43200 | < th | dose dependent | sin | 9 | NA |
| 799 | 469.89 | radiation | 30 | 43200 | < th | dose independent | no | NA | NA |
| 883 | 469.91 | humidity | 50 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 884 | 469.91 | humidity | 70 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 919 | 469.99 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 6 |
| 920 | 469.99 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 925 | 470.02 | humidity | 50 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 991 | 470.17 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |