Os05g0500900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Indole-3-acetic acid-amido synthetase GH3.5 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 5) (AtGH3-5).
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Os05g0500900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Indole-3-acetic acid-amido synthetase GH3.5 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 5) (AtGH3-5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.31 | 0.58 | 3.12 | -0.387 | 0.173 | 1.3 | -0.0333 | 3.55 | -0.0209 | 9.65 | 0.7123 | 1472 | -- | -- |
| 156.98 | 0.584 | 3.06 | -0.0651 | 0.174 | 0.588 | -0.125 | -- | 0.0558 | 9.49 | 2.52 | 1498 | -- | -- |
| 152.14 | 0.574 | 3.13 | -0.413 | 0.179 | 1.45 | -- | 4 | -0.0286 | 9.95 | 0.4522 | 1472 | -- | -- |
| 157.12 | 0.584 | 3.06 | -0.0844 | 0.181 | 0.576 | -- | -- | 0.0569 | 10.1 | 2.557 | 1510 | -- | -- |
| 153.39 | 0.577 | 3.14 | -0.439 | -- | 1.41 | -- | 4.02 | -0.0337 | -- | 0.4598 | 1447 | -- | -- |
| 160.24 | 0.593 | 3.08 | -0.17 | 0.103 | -- | -0.268 | -- | -0.0381 | 8.39 | -- | -- | -- | -- |
| 160.46 | 0.593 | 3.08 | -0.178 | 0.103 | -- | -- | -- | -0.038 | 8.54 | -- | -- | -- | -- |
| 157.81 | 0.585 | 3.07 | -0.109 | -- | 0.449 | -- | -- | 0.0214 | -- | 3.271 | 1310 | -- | -- |
| 157.16 | 0.584 | 3.06 | -- | 0.22 | 0.634 | -- | -- | 0.0496 | 11 | 2.467 | 1548 | -- | -- |
| 161.06 | 0.593 | 3.09 | -0.177 | -- | -- | -- | -- | -0.037 | -- | -- | -- | -- | -- |
| 161.3 | 0.594 | 3.08 | -- | 0.103 | -- | -- | -- | -0.0182 | 8.67 | -- | -- | -- | -- |
| 157.28 | 0.584 | 3.07 | -- | -- | 0.547 | -- | -- | 0.0568 | -- | 2.01 | 2833 | -- | -- |
| 161.89 | 0.594 | 3.08 | -- | -- | -- | -- | -- | -0.0173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.33 | radiation | 40 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 2 | 148.26 | radiation | 40 | 14400 | < th | dose independent | rect. | 16 | 10 |
| 4 | 148.67 | radiation | 40 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 6 | 148.84 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 7 | 148.93 | temperature | 15 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 8 | 149.02 | temperature | 15 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 10 | 149.14 | humidity | 80 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 12 | 149.22 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 16 | 149.40 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 18 | 149.47 | temperature | 15 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 23 | 149.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 8 |
| 27 | 149.56 | temperature | 15 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 40 | 149.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 45 | 149.67 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 54 | 149.72 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 57 | 149.73 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 62 | 149.74 | radiation | 40 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 74 | 149.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 80 | 149.82 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 86 | 149.83 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 96 | 149.86 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 109 | 149.90 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 18 |
| 127 | 149.94 | temperature | 15 | 43200 | > th | dose independent | sin | 15 | NA |
| 131 | 149.94 | temperature | 20 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 150 | 149.97 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 200 | 150.04 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 17 |
| 202 | 150.04 | temperature | 20 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 222 | 150.07 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 230 | 150.08 | temperature | 15 | 43200 | < th | dose independent | sin | 15 | NA |
| 238 | 150.08 | humidity | 80 | 43200 | > th | dose dependent | sin | 13 | NA |
| 256 | 150.10 | temperature | 15 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 330 | 150.15 | temperature | 20 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 332 | 150.16 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 379 | 150.19 | temperature | 15 | 43200 | > th | dose independent | no | NA | NA |
| 412 | 150.21 | temperature | 15 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 415 | 150.21 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 416 | 150.21 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 460 | 150.24 | temperature | 15 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 511 | 150.27 | humidity | 70 | 43200 | > th | dose dependent | rect. | 11 | 17 |
| 512 | 150.28 | temperature | 15 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 549 | 150.30 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 609 | 150.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 662 | 150.38 | temperature | 15 | 43200 | < th | dose independent | no | NA | NA |
| 713 | 150.41 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 735 | 150.43 | temperature | 15 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 839 | 150.53 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 895 | 150.58 | radiation | 10 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 933 | 150.61 | radiation | 40 | 43200 | > th | dose dependent | rect. | 15 | 17 |