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Os05g0586200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GH3 auxin-responsive promoter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.018) R2 : 0.548
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.04 (0.0461) R2dC : 0.505 R2C : 0.494
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.246 (0.0378) R2dN8 : 0.0542 R2N8 : 0.0432
σ : 0.338
deviance : 52.33
__
_____
C
peak time of C : 7.77
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.71 0.321 11.9 0.0953 0.902 0.442 0.528 -0.296 0.245 5.77 0.9512 31 -- --
47.22 0.32 11.9 0.0986 0.9 0.479 0.534 -- 0.248 5.54 0.8962 31 -- --
47.4 0.321 11.9 0.0981 0.903 0.437 -- -0.29 0.243 5.79 0.91 30 -- --
47.91 0.322 11.9 0.101 0.908 0.432 -- -- 0.245 5.82 0.8977 31 -- --
86.89 0.437 11.9 0.121 -- 0.448 -- -0.315 0.265 -- 0.93 27 -- --
51.89 0.338 11.9 0.12 1.04 -- 0.123 -- 0.26 7.76 -- -- -- --
51.93 0.337 11.9 0.124 1.04 -- -- -- 0.26 7.77 -- -- -- --
87.53 0.438 11.9 0.125 -- 0.447 -- -- 0.267 -- 0.93 27 -- --
48.18 0.323 11.9 -- 0.916 0.431 -- -- 0.236 5.81 0.8999 31 -- --
109.98 0.49 11.9 0.136 -- -- -- -- 0.274 -- -- -- -- --
52.33 0.338 11.9 -- 1.04 -- -- -- 0.246 7.77 -- -- -- --
87.94 0.438 11.9 -- -- 0.447 -- -- 0.253 -- 0.93 27 -- --
110.47 0.491 11.9 -- -- -- -- -- 0.259 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.57 temperature 20.0 720 > th dose dependent rect. 4 2
2 39.05 temperature 20.0 270 > th dose dependent rect. 3 6
16 40.32 temperature 20.0 720 > th dose independent rect. 4 2
24 40.81 temperature 10.0 10 > th dose dependent rect. 5 19
26 40.85 temperature 10.0 10 > th dose dependent rect. 5 17
31 40.95 temperature 10.0 90 > th dose dependent rect. 4 19
91 42.20 temperature 20.0 270 > th dose independent rect. 3 6
109 42.40 temperature 25.0 10 > th dose independent rect. 5 4
114 42.49 precipitation 0.1 90 < th dose independent rect. 19 14
115 42.49 precipitation 0.1 90 < th dose dependent rect. 19 14
116 42.50 temperature 25.0 10 > th dose independent rect. 5 6
120 42.53 radiation 1.0 30 < th dose independent sin 8 NA
121 42.53 temperature 10.0 270 > th dose dependent rect. 23 2
123 42.57 precipitation 0.1 270 < th dose independent rect. 3 19
124 42.57 precipitation 0.1 270 < th dose dependent rect. 3 19
129 42.60 temperature 10.0 270 > th dose dependent rect. 22 4
137 42.66 wind 5.0 270 < th dose independent rect. 21 6
141 42.71 precipitation 0.1 270 < th dose independent rect. 1 22
142 42.71 precipitation 0.1 270 < th dose dependent rect. 1 22
159 42.82 radiation 1.0 30 < th dose dependent sin 8 NA
163 42.84 radiation 1.0 30 > th dose independent rect. 5 4
174 42.84 precipitation 0.1 270 < th dose independent rect. 17 14
175 42.84 precipitation 0.1 270 < th dose dependent rect. 17 14
181 42.89 atmosphere 1000.0 90 > th dose dependent rect. 24 4
190 42.92 radiation 1.0 30 < th dose dependent rect. 22 21
192 42.94 temperature 15.0 270 > th dose independent rect. 3 19
193 42.94 atmosphere 1000.0 270 > th dose dependent rect. 24 1
203 42.98 wind 9.0 270 < th dose dependent rect. 21 6
209 43.03 radiation 1.0 30 > th dose independent sin 7 NA
217 43.06 radiation 40.0 90 < th dose independent rect. 19 14
218 43.07 radiation 1.0 30 < th dose independent rect. 22 21
221 43.09 wind 5.0 270 < th dose independent rect. 23 2
225 43.12 atmosphere 1015.0 270 < th dose independent rect. 22 5
234 43.19 temperature 10.0 270 > th dose independent rect. 22 5
235 43.19 temperature 30.0 270 < th dose independent rect. 22 5
236 43.19 humidity 50.0 270 > th dose independent rect. 22 5
239 43.19 atmosphere 995.0 270 > th dose independent rect. 22 5
240 43.19 radiation 1.0 270 < th dose independent rect. 22 5
247 43.19 radiation 1.0 270 < th dose dependent rect. 22 5
257 43.23 precipitation 0.1 270 < th dose independent rect. 22 5
258 43.23 wind 9.0 270 < th dose dependent rect. 22 4
259 43.23 precipitation 0.1 270 < th dose dependent rect. 22 5
260 43.23 wind 9.0 90 < th dose dependent rect. 4 11
262 43.24 wind 9.0 270 < th dose dependent rect. 23 2
273 43.28 humidity 60.0 90 > th dose independent rect. 19 14
274 43.28 atmosphere 995.0 270 > th dose dependent rect. 22 5
277 43.29 atmosphere 1015.0 270 < th dose independent rect. 23 2
291 43.37 temperature 10.0 90 > th dose independent rect. 9 10
292 43.37 atmosphere 1015.0 90 < th dose independent rect. 9 10
293 43.37 temperature 10.0 90 > th dose independent rect. 19 14
295 43.37 atmosphere 995.0 90 > th dose independent rect. 19 14
307 43.41 temperature 30.0 90 < th dose independent rect. 19 14
308 43.41 atmosphere 1000.0 10 > th dose dependent rect. 24 5
327 43.44 wind 9.0 270 < th dose independent rect. 3 19
337 43.45 precipitation 0.1 720 < th dose independent rect. 19 20
338 43.45 precipitation 0.1 720 < th dose dependent rect. 19 20
344 43.48 radiation 1.0 30 < th dose independent rect. 22 18
347 43.49 wind 9.0 90 < th dose independent rect. 19 14
350 43.50 radiation 1.0 30 < th dose independent rect. 22 16
357 43.51 temperature 10.0 270 > th dose independent rect. 23 2
358 43.51 temperature 30.0 270 < th dose independent rect. 23 2
359 43.51 humidity 50.0 270 > th dose independent rect. 23 2
362 43.51 atmosphere 995.0 270 > th dose independent rect. 23 2
363 43.51 radiation 1.0 270 < th dose independent rect. 23 2
368 43.51 temperature 10.0 270 > th dose independent rect. 1 22
369 43.51 radiation 1.0 270 < th dose dependent rect. 23 2
380 43.53 radiation 20.0 270 < th dose independent rect. 17 14
383 43.54 precipitation 0.1 270 < th dose independent rect. 23 2
384 43.54 precipitation 0.1 270 < th dose dependent rect. 23 2
388 43.56 temperature 25.0 10 < th dose independent rect. 24 14
394 43.59 radiation 1.0 30 < th dose independent rect. 22 14
397 43.59 radiation 1.0 90 < th dose dependent rect. 23 16
426 43.63 wind 9.0 90 < th dose independent rect. 9 10
427 43.63 radiation 1.0 30 < th dose independent rect. 22 10
429 43.63 temperature 25.0 10 < th dose independent rect. 24 12
441 43.65 temperature 25.0 10 > th dose independent rect. 2 9
450 43.67 radiation 10.0 270 < th dose independent rect. 5 1
455 43.68 humidity 50.0 270 > th dose independent rect. 17 14
458 43.68 wind 7.0 30 < th dose dependent rect. 22 7
486 43.71 radiation 1.0 30 < th dose independent rect. 24 14
494 43.73 precipitation 0.1 90 < th dose independent rect. 9 10
498 43.73 precipitation 0.1 90 < th dose dependent rect. 9 10
499 43.74 wind 9.0 90 < th dose dependent rect. 4 9
502 43.75 temperature 10.0 270 > th dose independent rect. 7 10
503 43.75 atmosphere 1015.0 270 < th dose independent rect. 7 10
504 43.75 temperature 10.0 270 > th dose independent rect. 17 14
526 43.79 radiation 1.0 30 < th dose independent rect. 24 12
529 43.81 wind 5.0 30 < th dose dependent rect. 5 4
532 43.82 radiation 1.0 30 < th dose independent rect. 24 8
547 43.84 atmosphere 1015.0 270 < th dose independent rect. 3 18
571 43.88 temperature 15.0 10 > th dose dependent rect. 5 11
575 43.90 atmosphere 1005.0 270 > th dose independent rect. 24 1
576 43.90 wind 9.0 270 < th dose independent rect. 7 10
578 43.90 radiation 1.0 30 < th dose dependent rect. 22 10
601 43.92 temperature 25.0 10 > th dose independent rect. 5 17
608 43.93 wind 5.0 10 < th dose dependent rect. 24 4
620 43.94 radiation 1.0 30 < th dose dependent rect. 24 8
626 43.95 wind 9.0 10 < th dose dependent rect. 24 5
629 43.96 atmosphere 1005.0 90 > th dose independent rect. 24 4
633 43.97 wind 9.0 270 < th dose independent rect. 17 14
641 43.98 temperature 25.0 10 < th dose independent sin 5 NA
648 43.98 temperature 10.0 90 > th dose dependent rect. 4 11
665 43.99 temperature 10.0 10 > th dose dependent rect. 24 5
681 44.01 radiation 1.0 30 < th dose independent rect. 22 8
684 44.01 humidity 50.0 270 > th dose dependent rect. 23 2
694 44.03 wind 5.0 10 < th dose independent rect. 24 5
699 44.04 temperature 25.0 10 > th dose independent sin 4 NA
704 44.05 humidity 50.0 270 > th dose dependent rect. 21 6
714 44.07 radiation 1.0 270 > th dose independent rect. 5 1
742 44.10 humidity 50.0 90 > th dose dependent rect. 23 5
776 44.16 wind 9.0 30 < th dose dependent rect. 5 17
780 44.17 radiation 40.0 270 < th dose dependent rect. 17 14
784 44.18 wind 3.0 30 < th dose independent rect. 5 4
801 44.19 radiation 1.0 10 < th dose dependent rect. 24 6
844 44.22 radiation 30.0 30 < th dose independent rect. 5 4
858 44.23 humidity 70.0 30 > th dose independent rect. 5 4
859 44.23 precipitation 0.1 270 < th dose independent rect. 7 10
860 44.23 temperature 25.0 10 > th dose independent rect. 5 12
862 44.23 precipitation 0.1 270 < th dose dependent rect. 7 10
896 44.27 atmosphere 995.0 270 > th dose independent rect. 3 19
901 44.28 wind 9.0 10 < th dose independent rect. 5 19
911 44.29 radiation 30.0 90 < th dose independent rect. 4 7
922 44.30 atmosphere 995.0 270 > th dose independent rect. 17 14
927 44.31 atmosphere 1015.0 10 < th dose independent rect. 24 5
932 44.31 wind 9.0 90 < th dose dependent rect. 15 13
947 44.33 temperature 10.0 10 > th dose independent rect. 24 5
948 44.33 temperature 30.0 10 < th dose independent rect. 24 5
949 44.33 humidity 50.0 10 > th dose independent rect. 24 5
952 44.33 atmosphere 995.0 10 > th dose independent rect. 24 5
963 44.33 temperature 10.0 10 > th dose independent rect. 5 19
974 44.35 humidity 90.0 270 > th dose independent rect. 4 2
986 44.36 atmosphere 995.0 90 > th dose independent rect. 9 10
988 44.37 wind 1.0 270 > th dose independent rect. 22 5
990 44.37 atmosphere 1015.0 30 < th dose independent rect. 22 7