BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0572300 Os07g0572300|AK074013
(284 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0572300 Protein of unknown function DUF868, plant fami... 587 e-168
Os03g0806700 Protein of unknown function DUF868, plant fami... 356 9e-99
Os02g0198800 Protein of unknown function DUF868, plant fami... 182 3e-46
Os01g0909400 Protein of unknown function DUF868, plant fami... 178 4e-45
Os05g0108400 Protein of unknown function DUF868, plant fami... 175 3e-44
AK069886 153 2e-37
Os08g0557300 Protein of unknown function DUF868, plant fami... 111 7e-25
Os11g0150100 Protein of unknown function DUF868, plant fami... 95 5e-20
Os09g0567200 87 2e-17
Os08g0439600 Protein of unknown function DUF868, plant fami... 81 1e-15
Os04g0407500 Protein of unknown function DUF868, plant fami... 76 2e-14
Os06g0181800 67 2e-11
>Os07g0572300 Protein of unknown function DUF868, plant family protein
Length = 284
Score = 587 bits (1513), Expect = e-168, Method: Compositional matrix adjust.
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MRDFASCLSQSGVQVAHSSSPGGQNMVQCTYLARLRGKSCSVTVTWSKMTMGQALSVAVD 60
MRDFASCLSQSGVQVAHSSSPGGQNMVQCTYLARLRGKSCSVTVTWSKMTMGQALSVAVD
Sbjct: 1 MRDFASCLSQSGVQVAHSSSPGGQNMVQCTYLARLRGKSCSVTVTWSKMTMGQALSVAVD 60
Query: 61 DSSNRCLCKAEIKPWLFSKRKGSKAMEVDGGALDIVWDLSSAKFAAGPEPVEGFYVALVC 120
DSSNRCLCKAEIKPWLFSKRKGSKAMEVDGGALDIVWDLSSAKFAAGPEPVEGFYVALVC
Sbjct: 61 DSSNRCLCKAEIKPWLFSKRKGSKAMEVDGGALDIVWDLSSAKFAAGPEPVEGFYVALVC 120
Query: 121 DLEAVLVLGDMRKDGDHRVSSDVLASNAVMIARKEHVYGKKVYSAKARFLDIGQLHHITI 180
DLEAVLVLGDMRKDGDHRVSSDVLASNAVMIARKEHVYGKKVYSAKARFLDIGQLHHITI
Sbjct: 121 DLEAVLVLGDMRKDGDHRVSSDVLASNAVMIARKEHVYGKKVYSAKARFLDIGQLHHITI 180
Query: 181 ECDTSGLKDPSLEIRIGKKRVMQVKRLAWKFRGNQTVYVDGLPVEVLWDVHDWLFGSSNK 240
ECDTSGLKDPSLEIRIGKKRVMQVKRLAWKFRGNQTVYVDGLPVEVLWDVHDWLFGSSNK
Sbjct: 181 ECDTSGLKDPSLEIRIGKKRVMQVKRLAWKFRGNQTVYVDGLPVEVLWDVHDWLFGSSNK 240
Query: 241 CAVFLFQSGQSMEKLLSRSCSQNEKELQAHRFGFTLILNAWKTE 284
CAVFLFQSGQSMEKLLSRSCSQNEKELQAHRFGFTLILNAWKTE
Sbjct: 241 CAVFLFQSGQSMEKLLSRSCSQNEKELQAHRFGFTLILNAWKTE 284
>Os03g0806700 Protein of unknown function DUF868, plant family protein
Length = 291
Score = 356 bits (914), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 172/291 (59%), Positives = 214/291 (73%), Gaps = 7/291 (2%)
Query: 1 MRDFASCLSQSGVQVAHSSSPGG-------QNMVQCTYLARLRGKSCSVTVTWSKMTMGQ 53
MRDF SC +SGVQ+A +SS QN+V C Y A+ G+ C ++VTWSK MGQ
Sbjct: 1 MRDFPSCFGESGVQIADASSSSSSAGKGAAQNLVTCLYQAQFSGRPCVISVTWSKSLMGQ 60
Query: 54 ALSVAVDDSSNRCLCKAEIKPWLFSKRKGSKAMEVDGGALDIVWDLSSAKFAAGPEPVEG 113
LS+ VDD SN+CLCKA+IKPWLFSK+KGSK ++V+ G ++I WDLS AKF AGPEP+EG
Sbjct: 61 GLSIGVDDLSNQCLCKADIKPWLFSKKKGSKRLDVEDGKIEIFWDLSGAKFGAGPEPMEG 120
Query: 114 FYVALVCDLEAVLVLGDMRKDGDHRVSSDVLASNAVMIARKEHVYGKKVYSAKARFLDIG 173
FYVA+V DLE +L+LGDM+KD + ++ NA +AR+EH+YGKK+Y+AKA+F + G
Sbjct: 121 FYVAVVFDLELILLLGDMKKDAYRKTGANRPMLNAAFVARREHIYGKKIYTAKAQFCENG 180
Query: 174 QLHHITIECDTSGLKDPSLEIRIGKKRVMQVKRLAWKFRGNQTVYVDGLPVEVLWDVHDW 233
Q H + IECDT LKDP LEIR+ KK VMQVKRLAWKFRGNQT+ VDGLPVEV WDVH W
Sbjct: 181 QFHDVVIECDTVSLKDPCLEIRVDKKPVMQVKRLAWKFRGNQTILVDGLPVEVFWDVHSW 240
Query: 234 LFGSSNKCAVFLFQSGQSMEKLLSRSCSQNEKELQAHRFGFTLILNAWKTE 284
LFG + AVF+FQ+ Q+ EK + S SQ +E Q GF+LIL AWK E
Sbjct: 241 LFGLTTSNAVFMFQTCQAPEKSMPWSYSQVFRESQLQGLGFSLILYAWKLE 291
>Os02g0198800 Protein of unknown function DUF868, plant family protein
Length = 328
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 146/266 (54%), Gaps = 12/266 (4%)
Query: 31 YLARLRGKSCSVTVTWSKMTMGQALSVAVDDSSNRCLC---------KAEIKPWLFSKRK 81
Y A++ G VT W + + Q+ ++++D K E+KPW F ++
Sbjct: 63 YRAKINGAPRHVTAVWHRTLINQSFTISIDGGGGGGAGAGDDGALSHKVELKPWPFWSKR 122
Query: 82 GSKAMEVDGGALDIVWDLSSAKF-AAGPEPVEGFYVALVCDLEAVLVLGDMRKDGDHRVS 140
G+K ++VDG LDIVWDL SAKF A+ PEP G+YVALV E VL+LGD +KD R
Sbjct: 123 GAKTLDVDGDRLDIVWDLRSAKFPASSPEPAAGYYVALVSRDEVVLLLGDGKKDAFKRTR 182
Query: 141 SDVLASNAVMIARKEHVYGKKVYSAKARFLDIGQLHHITIECDTSGLKDPSLEIRIGKKR 200
S +AV+++R+E V G++ ++A+A + H I ++ +G ++P + I +
Sbjct: 183 SRPSLDDAVLVSRRESVSGRRTFAARAPLAAGRKDHEIVVDSAIAGPREPEMRITVDGVV 242
Query: 201 VMQVKRLAWKFRGNQTVYVDGLPVEVLWDVHDWLF-GSSNKCAVFLFQSGQSME-KLLSR 258
++ V+ L WKFRGN+TV VD PV+VLWDVHDW+F G AVF+F+ G
Sbjct: 243 LVHVRSLQWKFRGNETVIVDQSPVQVLWDVHDWIFAGGPAAQAVFVFKPGAPPPGGDRCG 302
Query: 259 SCSQNEKELQAHRFGFTLILNAWKTE 284
G++ L AWKTE
Sbjct: 303 RRGGAGAGGIGDEGGYSFFLQAWKTE 328
>Os01g0909400 Protein of unknown function DUF868, plant family protein
Length = 325
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 155/295 (52%), Gaps = 38/295 (12%)
Query: 24 QNMVQCTYLARLRGKSCSVTVTWSKMTMGQALSVAVDDSSNR------------------ 65
Q+ V Y A + G VTVTW + + LSV+++ S+
Sbjct: 35 QSAVTLVYRAEISGHRRLVTVTWCRNLLTHGLSVSIEGSAGNGKDKIGREYGEAAVAATA 94
Query: 66 -------------CLCKAEIKPWLFSKRKGSKAMEVDGGALDIVWDLSSAKFAAGPEPVE 112
CK E++PW F ++ G+K +VDG A+D+VWDL SA+F+ PEP+
Sbjct: 95 ADGGGGGGGGKSCSACKVEMQPWHFWRKYGAKQFQVDGNAIDVVWDLRSARFSDEPEPLS 154
Query: 113 GFYVALVCDLEAVLVLGDMRKDGDHRVSSDVLASNAVMIARKEHVYGKKVYSAKARFLDI 172
+YVA+V E VL+LG+++KD R S +AV++ +KEHV+ KK + KARF D
Sbjct: 155 DYYVAVVAGEEVVLLLGNLKKDAFRRTGSRPSLQDAVLVCKKEHVFSKKRFVTKARFSDR 214
Query: 173 GQLHHITIECDTSGL---KDPSLEIRIGKKRVMQVKRLAWKFRGNQTVYVDGLPVEVLWD 229
G+LH I+IEC +S L D + I+I + V+ L WKFRGN+ + ++ L V+V WD
Sbjct: 215 GKLHDISIECSSSNLTGGTDVDMAIKIDGCVSVLVRHLQWKFRGNECISINKLKVQVYWD 274
Query: 230 VHDWLFGSSNKCAVFLFQSGQSMEKLLSRSCSQNEKELQAHRFGFTLILNAWKTE 284
HDWLFG+ + A+F+F+ S + E F L L AWK E
Sbjct: 275 AHDWLFGTGMRHALFIFKPEPPSPSPPGASSEFSTDEYS----DFCLFLYAWKVE 325
>Os05g0108400 Protein of unknown function DUF868, plant family protein
Length = 306
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 156/281 (55%), Gaps = 27/281 (9%)
Query: 23 GQNMVQCTYLARLRGKSCSVTVTWSKMTMGQALSVAV---DDSSNRCLCKAEIKPWLFSK 79
G+ + Y A++ G S +TV+WS+ + + +V+V D +S C + +++PW F +
Sbjct: 34 GRAVTASVYRAKIAGHSRVLTVSWSRDMLSHSFAVSVTGVDGASAEC--RVDLRPWQFWR 91
Query: 80 RKGSKAMEVDGGA---LDIVWDLSSAKFAAG-PEPVEGFYVALVCDLEAVLVLGDMRKDG 135
R GS+ +E+ G A + ++WDL A+F AG PEP G+YVA+ E VLV+GDMRKD
Sbjct: 92 RAGSRRVELAGTAPATVRVMWDLRRARFGAGLPEPRSGYYVAVEAAGEVVLVVGDMRKDA 151
Query: 136 --DHRVSSDVLASNAVMIARKEHVYGKKVYSAKARFLDIGQLHHITIECDTSGLK---DP 190
+ A +AV +AR+EHV+GK+ ++AKARF D G +H I IEC G D
Sbjct: 152 LRRASPRAAPAACDAVPVARREHVFGKRRFAAKARFHDQGTVHDIAIECGGGGEGGDADM 211
Query: 191 SLEIRIGKKRVMQVKRLAWKFRGNQTVYVDGLPVEVLWDVHDWLFGSSNKCAVFLFQS-- 248
+ I I + +QVK L WKFRGNQ+V VE+ WDVHDWLF + + A+F+F+
Sbjct: 212 EMTIAIDGEEAVQVKHLQWKFRGNQSVTFSRAKVEIYWDVHDWLFSAGMRPALFIFRPIV 271
Query: 249 -----GQSMEKLLSRSCSQNEKELQAHRFGFTLILNAWKTE 284
+ LL S GF L L AWK +
Sbjct: 272 LSSASAPAAAMLLDGSPPPPPAT------GFCLYLYAWKLD 306
>AK069886
Length = 349
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 145/294 (49%), Gaps = 45/294 (15%)
Query: 1 MRDFASCLSQSGVQVAHSSSPGGQNM--------------------------VQCTYLAR 34
M+D SC S+ V+++ + G N V Y +R
Sbjct: 1 MKDLVSCFSEHAVRISDVACSGSANAATVSAAGVAAAGVGDGGGAGRAAVSAVTSVYRSR 60
Query: 35 LR--GKSCSVTVTWSKMTMGQALSVAVDDSSNRCLCKAEIK------PWLFSKRKGSKAM 86
L GK + VTWS+ G ALSVAV D++ + P +RKGS
Sbjct: 61 LSASGKDLVIDVTWSRAPDGPALSVAVHDAAAASRLRGGGGGAAGAAPRHLHRRKGSGTF 120
Query: 87 EVDGGALDIVWDLSSAKFAAGPEPVEGFYVALVCDLEAVLVLGDMRKDGDHRVSSDVLAS 146
+ + WD ++A++AAGPEPV G+YVA+V D E VL+LGDM + R+ + +
Sbjct: 121 TAGSCVVGVFWDFAAARYAAGPEPVSGYYVAVVADAEFVLLLGDMSRGYVERLHGGIPIA 180
Query: 147 NAVMIARKEHVYGKKVYSAKARFLDIGQLHHITIECDTSGLKDPSLEIRIGKKRVMQVKR 206
+ M R+E G +S +ARFL+ G H I + D D + + ++V+Q++R
Sbjct: 181 GSRMARRRERFVGCGCWSTRARFLESGAEHDIVVALD----GDAEAWVTVDGRKVVQLRR 236
Query: 207 LAWKFRGNQTVYVD-GLPVEVLWDVHDWLFGSSNK------CAVFLFQSGQSME 253
L W FRG+ T+++D G PV++ WD+H WLF +++ AVF FQ+ + E
Sbjct: 237 LRWNFRGSHTLFLDGGAPVDMTWDLHGWLFHAADPSPASSCAAVFTFQTRGASE 290
>Os08g0557300 Protein of unknown function DUF868, plant family protein
Length = 300
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 22/226 (9%)
Query: 24 QNMVQCTYLARLR-GKSCSVTVTWSKMTMG-QALSVAVDDS---SNRCLCKAEIKPWLFS 78
Q Y A L GK + VTW++ G L+VA DD+ S+RC +
Sbjct: 35 QAATTTVYGASLHSGKELLIRVTWTRSAAGATGLAVAFDDALSPSSRCAHH------VLH 88
Query: 79 KRKGSKAMEVDGG-ALDIVWDLSSAKFAAG--PEPVEGFYVALVCDLEAVLVLGD--MRK 133
K++GS+++ G A+ + WD + A +A+G PEP +Y+A+V D E L+LG+ +
Sbjct: 89 KKRGSRSLATAAGTAVGVHWDTAEATYASGSSPEPTGDYYLAVVADAELALLLGEGGAAR 148
Query: 134 DGDHRVSSDVLASNAVMIARKEHVYGKKV-YSAKARFLDIGQLHHITIECDTSGLKDPSL 192
D R D AV+++R+E + G ++ + RF + G H + + G
Sbjct: 149 DLSRRFGDD--GGGAVVLSRREQLRGAATAHTTRCRFREGGAEHEVAVHATRGGGGGGEG 206
Query: 193 EIR--IGKKRVMQVKRLAWKFRGNQT-VYVDGLPVEVLWDVHDWLF 235
E+R I KRV +V+R+ W FRGN+ V DG V+V+WDVHDW F
Sbjct: 207 EVRVSIDGKRVAEVRRVGWGFRGNRAAVLADGEVVDVMWDVHDWWF 252
>Os11g0150100 Protein of unknown function DUF868, plant family protein
Length = 338
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 20/204 (9%)
Query: 93 LDIVWDLSSAKF---AAGPEPVEGFYVALVCDLEAVLVLGDM-----RKDGDHRVSSDVL 144
L + WDL++A++ A+ PEPV G+YV V E VL +GD+ + + ++ +
Sbjct: 142 LALFWDLTAARYDPAASSPEPVSGYYVVAVASAEVVLAVGDLAAEFVKAKFEGQIPRARV 201
Query: 145 ASNAVMIARKEHVYGKKVYSAKARFLDIGQLHHITIECDTSGLKDP----SLEIRIGKKR 200
A + + +++A+ RF + G H +++ C + L + + KR
Sbjct: 202 APVSRVER-VVVSDPAAMHAARVRFAEGGPEHEVSVSCAPAAPGSGGGGDELWVCVDGKR 260
Query: 201 VMQVKRLAWKFRGNQTVYVDGLPVEVLWDVHDWLFGSSNKCAVFLFQSGQSMEKLLSRSC 260
+Q RL W FRGNQTV+VDG PV+V+WD+H W F CAV + ++ ++E L
Sbjct: 261 AVQACRLRWNFRGNQTVFVDGAPVDVMWDLHGWWFREPPGCAVVMLRARSALESRL---- 316
Query: 261 SQNEKELQAHRFGFTLILNAWKTE 284
E +A GF+LI+ A+K+
Sbjct: 317 ---WLEEEAAAPGFSLIVQAFKSP 337
>Os09g0567200
Length = 391
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 20/182 (10%)
Query: 74 PWLFSKRKGSKAMEVDGGAL-DIVWDLSSAKFAAG----PEPVEGFYVALVCDLEAVLVL 128
P K++G+++ + G + I WD + AK+ A PEP +Y+A+V D E ++L
Sbjct: 105 PQFLHKKRGTRSFVTEAGTVVAIYWDTTDAKYPAAGSSSPEPTRDYYLAVVADGELAVLL 164
Query: 129 GDMRKDGDHRVSSDVLASNAVMIARKEHV-----------YGKKVYSAKARFLDIGQLHH 177
G + A +++R+E + +S + RF G H
Sbjct: 165 GGG-EAARELARRFAAAPRRALLSRREQLRAAPASPAAMAAAAVAHSTRCRFRADGAEHE 223
Query: 178 ITIEC--DTSGLKDPSLEIRIGKKRVMQVKRLAWKFRGNQT-VYVDGLPVEVLWDVHDWL 234
+ + C + G +D + + I K+V++ +R+ W FRGN+T V DG VEV+WDVHDW
Sbjct: 224 VAVVCRGEEWGTRDGEVAVSIDGKKVVEARRVKWNFRGNRTAVLGDGAVVEVMWDVHDWW 283
Query: 235 FG 236
F
Sbjct: 284 FA 285
>Os08g0439600 Protein of unknown function DUF868, plant family protein
Length = 406
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 25/224 (11%)
Query: 37 GKSCSVTVTWSKMTMGQALSVAVDDSSNRCLCKAEIKPWLFSKRKGSKAMEVDGGA-LDI 95
G S + S ++ D+ ++ ++PWL +R+G++ G +D+
Sbjct: 52 GLSLRAVLRLSSPATAASVGTCFDEDADEETLAFRVRPWLLWRRRGTRRFRAAGDRRVDL 111
Query: 96 VWDLSSAKF--AAGPEPVEGFYVALVCDLEAVLVLGDMRKDGDHRVSSDVL-ASNAVMIA 152
WDL+ A+F + PEP GF+VA+V D E VL GD+ R + V+++
Sbjct: 112 AWDLTRARFPGSGSPEPSSGFFVAVVVDGEMVLAAGDLSDAAYRRTRARRPAGPRPVLLS 171
Query: 153 RKEHVY----GKKVYSAKARFLDIGQLHHITIECDTSGL----------------KDPSL 192
R+EHV G+ ++ G+ I+++ + G D L
Sbjct: 172 RREHVAMRDAGRGGRGHRSWVTVRGKEREISVDLVSRGRGRDTGSSGSSSREKDRADVGL 231
Query: 193 EIRIGKKRVMQVKRLAWKFRGNQTVYVDGLP-VEVLWDVHDWLF 235
+ I +RV+ V+RL WKFRG++ V + G V++ WD+H+WLF
Sbjct: 232 SVSIDGERVLHVRRLRWKFRGSERVDLGGGDRVQLSWDLHNWLF 275
>Os04g0407500 Protein of unknown function DUF868, plant family protein
Length = 185
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 11/123 (8%)
Query: 138 RVSSDVLASNAVMIARKEHVYGKKVYSAKARFLDIGQLHHITIECDTSGLKDPSLEIRIG 197
R+ + + + M R+E G +S +ARFL+ G H I + D D + +
Sbjct: 8 RLHGGIPIAGSRMARRRERFVGCGCWSTRARFLESGAEHDIVVALD----GDAEAWVTVD 63
Query: 198 KKRVMQVKRLAWKFRGNQTVYVD-GLPVEVLWDVHDWLFGSSNK------CAVFLFQSGQ 250
++V+Q++RL W FRG+ T+++D G PV++ WD+H WLF +++ AVF FQ+
Sbjct: 64 GRKVVQLRRLRWNFRGSHTLFLDGGAPVDMTWDLHGWLFHAADPSPASSCAAVFTFQTRG 123
Query: 251 SME 253
+ E
Sbjct: 124 ASE 126
>Os06g0181800
Length = 351
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 41 SVTVTWSKMTMGQALSVAVD-----DSSNRCLCKAEIKPWLFSKRKGSKAMEVDGGALDI 95
+VT+TWS+ +G L+ + + + PW +R+G K G A+
Sbjct: 38 TVTLTWSRGQLGLVLAAELHLAGEGAAPALRFLLRPLLPW---RRRGCKRFAGGGHAVAF 94
Query: 96 VWDLSSAKFAAG-PEPVEGFYVALVCDLEAVLVLGDMRKDGDHRVSSDVLASNAVMIARK 154
WD+S A+ A PEPV + + + D E VL + + S ++ R+
Sbjct: 95 TWDMSRARLAGRRPEPVARYSLHVCVDGELVLAA---------GDLALLAPSAGFLLTRR 145
Query: 155 EHVYGKKVYSAKARFLDI-GQLHHITIECDTSGLKDPSLEIRIGKKRVMQVKRLAWKFRG 213
E+ A A + + G H ++I ++D + + I ++ +QV+RL WKFRG
Sbjct: 146 ENAVAAGGGEAYATTVAVAGGRHEVSI-----AVEDAVMWVAIDGEKALQVRRLRWKFRG 200
Query: 214 NQTVYVDGLPVEVLWDVHDWLFGSSNKCAVFLFQ 247
++ + + V V WD+H WLF +++ AVF+ +
Sbjct: 201 SERLDLPRGRVRVSWDLHGWLF-AADAVAVFVLR 233
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,929,934
Number of extensions: 387678
Number of successful extensions: 847
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 812
Number of HSP's successfully gapped: 12
Length of query: 284
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 184
Effective length of database: 11,814,401
Effective search space: 2173849784
Effective search space used: 2173849784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)