Os08g0439600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF868, plant family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0439600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein of unknown function DUF868, plant family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.54 | 0.334 | 10.3 | 1.41 | 1.51 | 0.273 | 0.598 | 2.58 | 0.251 | 16.6 | 18 | 589 | -- | -- |
| 53.32 | 0.34 | 10.3 | 1.06 | 1.64 | 0.318 | 0.776 | -- | 0.283 | 16.6 | 30.05 | 1226 | -- | -- |
| 51.23 | 0.333 | 10.3 | 1.44 | 1.5 | 0.279 | -- | 2.83 | 0.257 | 16.6 | 17.98 | 521 | -- | -- |
| 55.74 | 0.348 | 10.3 | 0.914 | 1.62 | 0.364 | -- | -- | 0.252 | 16.7 | 29.61 | 2516 | -- | -- |
| 135.78 | 0.543 | 10.3 | 1.02 | -- | 1.45 | -- | 2.31 | -0.00356 | -- | 18.7 | 310 | -- | -- |
| 57.86 | 0.357 | 10.3 | 0.984 | 1.6 | -- | 1.14 | -- | 0.17 | 16.8 | -- | -- | -- | -- |
| 61.17 | 0.366 | 10.3 | 0.989 | 1.6 | -- | -- | -- | 0.175 | 16.8 | -- | -- | -- | -- |
| 125.59 | 0.522 | 10.4 | 0.676 | -- | 1.58 | -- | -- | -0.000848 | -- | 24.6 | 339 | -- | -- |
| 75.73 | 0.405 | 10.3 | -- | 1.6 | 0.54 | -- | -- | 0.175 | 16.7 | 29.54 | 2509 | -- | -- |
| 197.27 | 0.656 | 10.3 | 0.929 | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
| 86.95 | 0.436 | 10.4 | -- | 1.59 | -- | -- | -- | 0.0652 | 16.8 | -- | -- | -- | -- |
| 137.29 | 0.546 | 10.4 | -- | -- | 1.66 | -- | -- | -0.0924 | -- | 24.47 | 345 | -- | -- |
| 220.03 | 0.692 | 10.3 | -- | -- | -- | -- | -- | 0.0306 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 7 | 46.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 16 |
| 32 | 47.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 46 | 47.48 | temperature | 15 | 720 | > th | dose dependent | sin | 14 | NA |
| 47 | 47.52 | humidity | 90 | 90 | < th | dose independent | rect. | 1 | 14 |
| 57 | 47.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 10 |
| 59 | 47.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 8 |
| 63 | 47.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 65 | 47.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 75 | 47.70 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 18 |
| 136 | 48.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 138 | 48.09 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 152 | 48.14 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 13 |
| 158 | 48.15 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 197 | 48.31 | humidity | 60 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 219 | 48.41 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 9 |
| 264 | 48.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 329 | 48.79 | humidity | 70 | 10 | > th | dose independent | rect. | 19 | 10 |
| 365 | 48.91 | temperature | 15 | 10 | > th | dose dependent | sin | 11 | NA |
| 372 | 48.92 | humidity | 90 | 270 | > th | dose dependent | rect. | 24 | 14 |
| 374 | 48.92 | humidity | 90 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 391 | 48.96 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 15 |
| 417 | 49.01 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 15 |
| 447 | 49.08 | humidity | 90 | 10 | < th | dose dependent | rect. | 21 | 18 |
| 458 | 49.10 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 18 |
| 481 | 49.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 5 |
| 494 | 49.16 | humidity | 90 | 270 | > th | dose dependent | sin | 6 | NA |
| 537 | 49.26 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 585 | 49.33 | humidity | 90 | 10 | < th | dose dependent | rect. | 1 | 14 |
| 588 | 49.34 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 596 | 49.36 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 603 | 49.37 | humidity | 90 | 270 | > th | dose independent | sin | 7 | NA |
| 607 | 49.38 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 643 | 49.44 | humidity | 90 | 270 | < th | dose independent | sin | 6 | NA |
| 648 | 49.45 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 7 |
| 657 | 49.46 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 5 |
| 670 | 49.48 | humidity | 90 | 90 | > th | dose dependent | sin | 3 | NA |
| 690 | 49.52 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 701 | 49.54 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 3 |
| 745 | 49.59 | radiation | 1 | 270 | < th | dose independent | rect. | 16 | 11 |
| 775 | 49.64 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 776 | 49.64 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 7 |
| 802 | 49.68 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 5 |
| 808 | 49.68 | humidity | 70 | 30 | > th | dose dependent | sin | 3 | NA |
| 814 | 49.69 | radiation | 1 | 270 | < th | dose independent | sin | 15 | NA |
| 822 | 49.70 | radiation | 1 | 270 | > th | dose independent | rect. | 14 | 5 |
| 852 | 49.72 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 860 | 49.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 3 |
| 888 | 49.77 | humidity | 60 | 270 | > th | dose independent | rect. | 17 | 10 |
| 892 | 49.77 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 4 |
| 898 | 49.78 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 8 |
| 918 | 49.80 | radiation | 1 | 270 | < th | dose dependent | rect. | 16 | 11 |
| 921 | 49.81 | humidity | 90 | 90 | > th | dose independent | sin | 4 | NA |
| 931 | 49.82 | temperature | 25 | 720 | < th | dose independent | sin | 13 | NA |
| 960 | 49.86 | radiation | 1 | 270 | > th | dose independent | sin | 15 | NA |
| 971 | 49.87 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 1 |
| 972 | 49.87 | radiation | 40 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 999 | 49.89 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 6 |