BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0439600 Os08g0439600|Os08g0439600
(406 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0439600 Protein of unknown function DUF868, plant fami... 491 e-139
Os09g0416600 Protein of unknown function DUF868, plant fami... 167 2e-41
Os06g0181800 83 4e-16
>Os08g0439600 Protein of unknown function DUF868, plant family protein
Length = 406
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 274/406 (67%), Positives = 274/406 (67%)
Query: 1 MPSAIAACFRCXXXXXXXXXXXXXXXXXXLATSVYETHLGLAALSWTRTSLGLSLRAVLR 60
MPSAIAACFRC LATSVYETHLGLAALSWTRTSLGLSLRAVLR
Sbjct: 1 MPSAIAACFRCAPSAAAAASAASGPAGPSLATSVYETHLGLAALSWTRTSLGLSLRAVLR 60
Query: 61 LSSPATAASVGTCFDEDADEETLAFRVXXXXXXXXXXXXXXXXXXXXXVDLAWDLTRARX 120
LSSPATAASVGTCFDEDADEETLAFRV VDLAWDLTRAR
Sbjct: 61 LSSPATAASVGTCFDEDADEETLAFRVRPWLLWRRRGTRRFRAAGDRRVDLAWDLTRARF 120
Query: 121 XXXXXXXXXXXXXVAVVVDGEMVLAAGDLSDXXXXXXXXXXXXXXXXVLLSRREHVAMRD 180
VAVVVDGEMVLAAGDLSD VLLSRREHVAMRD
Sbjct: 121 PGSGSPEPSSGFFVAVVVDGEMVLAAGDLSDAAYRRTRARRPAGPRPVLLSRREHVAMRD 180
Query: 181 AGRGGRGHRSWVTVRGKEREISVDLVXXXXXXXXXXXXXXXXEKDRADVGLSVSIDGERV 240
AGRGGRGHRSWVTVRGKEREISVDLV EKDRADVGLSVSIDGERV
Sbjct: 181 AGRGGRGHRSWVTVRGKEREISVDLVSRGRGRDTGSSGSSSREKDRADVGLSVSIDGERV 240
Query: 241 LHVRRLRWKFRGSERVDLGGGDRVQLSWDLHNWLFPQREPPTTDXXXXXXXXXVFVFRFD 300
LHVRRLRWKFRGSERVDLGGGDRVQLSWDLHNWLFPQREPPTTD VFVFRFD
Sbjct: 241 LHVRRLRWKFRGSERVDLGGGDRVQLSWDLHNWLFPQREPPTTDAAAHAHAHAVFVFRFD 300
Query: 301 LGGGGEEASEHAKALCDKAPRRDAAGILRGYFARWGQKDWXXXXXXXXXXXXXXXXXXXX 360
LGGGGEEASEHAKALCDKAPRRDAAGILRGYFARWGQKDW
Sbjct: 301 LGGGGEEASEHAKALCDKAPRRDAAGILRGYFARWGQKDWSETGSERRKRGRGRRLAKAS 360
Query: 361 XXXXXXXXXXXXXXXXXXTVMDWASPEEAEMQRGDGFSLLIYAWKS 406
TVMDWASPEEAEMQRGDGFSLLIYAWKS
Sbjct: 361 SSSSASVASSTASWASGSTVMDWASPEEAEMQRGDGFSLLIYAWKS 406
>Os09g0416600 Protein of unknown function DUF868, plant family protein
Length = 237
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 130/239 (54%), Gaps = 14/239 (5%)
Query: 178 MRDAGRGGRGHRSWVTVRGKEREISVDLVXXXXXXXXXXXXXXXXEKDRADVGLSVSIDG 237
MRDAG G RGH+++V VRGKEREISVDLV +K ADVG+SV++DG
Sbjct: 1 MRDAGHG-RGHKTFVNVRGKEREISVDLVSRGHGKDRDKDKDKERDK--ADVGMSVTVDG 57
Query: 238 ERVLHVRRLRWKFRGSERVDLGGGDRVQLSWDLHNWLFPQREPPTTDXXX----XXXXXX 293
ERVLH+RRLRWKFRG+E+VDLGGGD VQ+SWDLH+WLFP R+ D
Sbjct: 58 ERVLHIRRLRWKFRGTEKVDLGGGDGVQVSWDLHHWLFPNRDTAPADASAVTPPPQPAHA 117
Query: 294 VFVFRFDL----GGGGEEASEHAKALCDKAPRRDAAGILRGYFARWGQKDWXXXXXXXXX 349
VF+FRF+L G + A + L + A G GY RWG+ DW
Sbjct: 118 VFIFRFELADIAGDDRDSAEVKDEHLLENAGSGGGGGAWAGYLGRWGRGDWSESSSNGEN 177
Query: 350 XXXXXXX---XXXXXXXXXXXXXXXXXXXXXXTVMDWASPEEAEMQRGDGFSLLIYAWK 405
TVMDWASPEEAE+QRG GFSLL+YAWK
Sbjct: 178 RRKRGQARRLAKASSSSSASVASSSASWASGSTVMDWASPEEAELQRGHGFSLLVYAWK 236
>Os06g0181800
Length = 351
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 113/269 (42%), Gaps = 62/269 (23%)
Query: 32 TSVYETHLGLAALSWTRTSLGLSLRAVLRLSSPATAASVGTCFDEDADEETLAFRVXXXX 91
TSVY THLG L+W+R LGL L A L L+ A ++ +
Sbjct: 29 TSVYWTHLGTVTLTWSRGQLGLVLAAELHLAGEGAAPALRFLLRPLLPWRRRGCK----- 83
Query: 92 XXXXXXXXXXXXXXXXXVDLAWDLTRARXXXXXXXXXXXXXXVAVVVDGEMVLAAGDLSD 151
V WD++RAR + V VDGE+VLAAGDL+
Sbjct: 84 ---------RFAGGGHAVAFTWDMSRARLAGRRPEPVARYS-LHVCVDGELVLAAGDLA- 132
Query: 152 XXXXXXXXXXXXXXXXVLLSRREHVAMRDAGRGGRGHRSWVTVRGKEREISVDLVXXXXX 211
LL+RRE+ A GG + + V V G E+S+ +
Sbjct: 133 ---------LLAPSAGFLLTRRENAV---AAGGGEAYATTVAVAGGRHEVSIAV------ 174
Query: 212 XXXXXXXXXXXEKDRADVGLSVSIDGERVLHVRRLRWKFRGSERVDLGGGDRVQLSWDLH 271
D + V+IDGE+ L VRRLRWKFRGSER+DL G RV++SWDLH
Sbjct: 175 ---------------EDAVMWVAIDGEKALQVRRLRWKFRGSERLDLPRG-RVRVSWDLH 218
Query: 272 NWLFPQREPPTTDXXXXXXXXXVFVFRFD 300
WLF VFV RF+
Sbjct: 219 GWLF------------AADAVAVFVLRFE 235
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,676,192
Number of extensions: 347917
Number of successful extensions: 815
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 811
Number of HSP's successfully gapped: 4
Length of query: 406
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 303
Effective length of database: 11,657,759
Effective search space: 3532300977
Effective search space used: 3532300977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)