BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0439600 Os08g0439600|Os08g0439600
(406 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11000.1 | chr5:3479166-3480335 REVERSE LENGTH=390 94 1e-19
AT2G25200.1 | chr2:10736580-10737644 REVERSE LENGTH=355 66 3e-11
AT3G04860.1 | chr3:1339349-1340218 REVERSE LENGTH=290 61 9e-10
AT5G28150.1 | chr5:10135826-10136695 FORWARD LENGTH=290 60 2e-09
AT3G13229.1 | chr3:4268566-4269435 REVERSE LENGTH=290 49 3e-06
>AT5G11000.1 | chr5:3479166-3480335 REVERSE LENGTH=390
Length = 389
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 120/292 (41%), Gaps = 52/292 (17%)
Query: 30 LATSVYETHLGLAALSWTRTSLG-------LSLRAVLRLSSPATAASVGTCFDEDA---- 78
L T +Y+T G+ L+W+RT LG L + SSP + +S
Sbjct: 34 LTTCLYQTDHGVFYLTWSRTFLGGHSVNLFLHSQDYYNHSSPLSFSSADLSLSSAVSFHL 93
Query: 79 DEETLAFRVXXXXXXXXXXXXXXXXXXXXXVDLAWDLTRARXXXXXXXXXXXXXXVAVVV 138
+ TLAF + + WDL++A+ +AVVV
Sbjct: 94 NLNTLAF-----------WKKRGSRFVSPKIQVFWDLSKAKFDSGSEPRSGFY--IAVVV 140
Query: 139 DGEMVLAAGDLSDXXXXXXXXXXXXXXXXVLLSRREHVAMRDAGRGGRGHRSWVTVRGKE 198
DGEM L GD LL R+EHV G R + GK
Sbjct: 141 DGEMGLLVGDSVKEAYARAKSAKPPTNPQALLLRKEHVF------GARVFTTKARFGGKN 194
Query: 199 REISVDLVXXXXXXXXXXXXXXXXEKDRADVGLSVSIDGERVLHVRRLRWKFRGSERVDL 258
REIS+D + D L S+D ++VL ++RLRWKFRG+E+V++
Sbjct: 195 REISIDC------------------RVDEDAKLCFSVDSKQVLQIKRLRWKFRGNEKVEI 236
Query: 259 GGGDRVQLSWDLHNWLFPQREPPTTDXXXXXXXXXVFVFRFDLGGGGEEASE 310
G VQ+SWD++NWLF + ++ VF+FRF+ EE E
Sbjct: 237 DGV-HVQISWDVYNWLFQSK---SSGDGGGGGGHAVFMFRFESDPEAEEVCE 284
>AT2G25200.1 | chr2:10736580-10737644 REVERSE LENGTH=355
Length = 354
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 108/270 (40%), Gaps = 42/270 (15%)
Query: 31 ATSVYETHLGLAALSWTRTSLGLSLRAVLRLSSPATAASVGTCFDEDADEETLAFRVXXX 90
T Y T++G+ LSW+R+ L SL L S + D AFR+
Sbjct: 50 TTCQYHTNVGVFFLSWSRSFLRRSLH--LHFYSCNSTNCYLHSLDCYRHSIPFAFRLEIK 107
Query: 91 XXXXXXXXXXXXXXXXXXVDLAWDLTRARXXXXXXXXXXXXXXVAVVVDGEMVLAAGDLS 150
+ + WDLT A+ V V + +++ G+L
Sbjct: 108 PLTFWRKNGSKKLSRKPDIRVVWDLTHAKFGSGPDPESGFYVAVFVSGEVGLLVGGGNLK 167
Query: 151 DXXXXXXXXXXXXXXXXVLLSRREHVAMRDAGRGGRGHRSWVTVRGKEREISVDLVXXXX 210
+L+S++E++ G R + + + ++GK REIS+D+
Sbjct: 168 QRPRRQ-----------ILVSKKENLF------GNRVYSTKIMIQGKLREISIDVKVV-- 208
Query: 211 XXXXXXXXXXXXEKDRADVGLSVSIDGERVLHVRRLRWKFRGSERVDLGGGDRVQLSWDL 270
D L S+D + VL + +L+WKFRG+ ++ + G +Q+SWD+
Sbjct: 209 ---------------NDDASLRFSVDDKSVLKISQLQWKFRGNTKIVIDGVT-IQISWDV 252
Query: 271 HNWLFPQREPPTTDXXXXXXXXXVFVFRFD 300
NWLF ++ D VF+ RF+
Sbjct: 253 FNWLFGGKDKVKPD-----KIPAVFLLRFE 277
>AT3G04860.1 | chr3:1339349-1340218 REVERSE LENGTH=290
Length = 289
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 109 VDLAWDLTRARXXXXXXXXXXXXXXVAVVVDGEMVLAAGDLSDXXXXXXXXXXXXXXXXV 168
+D+ WDL+ A+ V VVVD EMVL GD+ V
Sbjct: 98 IDVFWDLSSAKFGSSPEPLGGFY--VGVVVDKEMVLLLGDMKKEAFKKTNAAPSSSLGAV 155
Query: 169 LLSRREHVAMRDAGRGGRGHRSWVTVRGKEREISVDLVXXXXXXXXXXXXXXXXEKDRAD 228
++++EHV G+ ++ + GK ++ ++ + +D
Sbjct: 156 FIAKKEHVF----GKRTFATKAQFSGDGKTHDLVIEC-----------------DTSLSD 194
Query: 229 VGLSVSIDGERVLHVRRLRWKFRGSERVDLGGGDRVQLSWDLHNWLFPQREPPTTDXXXX 288
L V +DG+ ++ V+RL WKFRG++ + + V++ WD+H+W F P
Sbjct: 195 PCLIVRVDGKILMQVQRLHWKFRGNDTI-IVNRISVEVLWDVHSWFFGLPSSPGN----- 248
Query: 289 XXXXXVFVFR 298
VF+FR
Sbjct: 249 ----AVFMFR 254
>AT5G28150.1 | chr5:10135826-10136695 FORWARD LENGTH=290
Length = 289
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 35/190 (18%)
Query: 109 VDLAWDLTRARXXXXXXXXXXXXXXVAVVVDGEMVLAAGDLSDXXXXXXXXXXXXXXXXV 168
+D+ WDL+ A+ V VVVD EMVL GD+ V
Sbjct: 98 IDVFWDLSSAKFGSGPEALGGFY--VGVVVDKEMVLLLGDMKKEAFKKTNASPSSLGA-V 154
Query: 169 LLSRREHVAMRDAGRGGRGHRSWVTVRGKEREISVDLVXXXXXXXXXXXXXXXXEKDRAD 228
++++EHV G+ ++ + GK ++ ++ + + D
Sbjct: 155 FIAKKEHVF----GKRVFATKAQLFADGKFHDLLIEC-----------------DTNVTD 193
Query: 229 VGLSVSIDGERVLHVRRLRWKFRGSERVDLGGGDRVQLSWDLHNWLFPQREPPTTDXXXX 288
L V +DG+ +L V+RL+WKFRG++ + + V++ WD+H+WLF PTT
Sbjct: 194 PCLVVRVDGKTLLQVKRLKWKFRGNDTIVVNKM-TVEVLWDVHSWLFGL---PTTG---- 245
Query: 289 XXXXXVFVFR 298
VF+FR
Sbjct: 246 ---NAVFMFR 252
>AT3G13229.1 | chr3:4268566-4269435 REVERSE LENGTH=290
Length = 289
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 33/173 (19%)
Query: 109 VDLAWDLTRARXXXXXXXXXXXXXXVAVVVDGEMVLAAGDLSDXXXXXXXXXXXXXXXXV 168
VD+ WD +A+ V++V VL GDL +
Sbjct: 79 VDVYWDFRQAKFSNFPEPSSGFY--VSLVSQNATVLTIGDLRNEALKRTKKNPSATEA-A 135
Query: 169 LLSRREHV------AMRDAGRGGRGHRSWVTVRGKEREISVDLVXXXXXXXXXXXXXXXX 222
L+S++EHV R A GG R E E+ ++
Sbjct: 136 LVSKQEHVHGKRVFYTRTAFGGGESRR--------ENEVVIETSLSGP------------ 175
Query: 223 EKDRADVGLSVSIDGERVLHVRRLRWKFRGSERVDLGGGDRVQLSWDLHNWLF 275
+D + +++DG + + L W+FRG+E V + G +++ WD+H+WLF
Sbjct: 176 ----SDPEMWITVDGVPAIRIMNLNWRFRGNEVVTVSDGVSLEIFWDVHDWLF 224
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,051,081
Number of extensions: 180526
Number of successful extensions: 312
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 5
Length of query: 406
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 305
Effective length of database: 8,337,553
Effective search space: 2542953665
Effective search space used: 2542953665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)