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Os03g0806700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF868, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.95 (0.0304) R2 : 0.728
β1 : -2.41 (0.111) R2dD : 0.293 R2D : 0.216
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.67 (0.0627) R2dE : 0.423 R2E : 0.397
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.692 (0.065) R2dN8 : 0.0916 R2N8 : 0.0137
σ : 0.568
deviance : 147.25
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.8897
memory length : 3
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.11
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.05 0.546 7.96 -2.49 0.555 -2.02 -0.99 2.01 -0.718 3.03 0.8879 11 4.43 --
137.01 0.549 7.96 -2.38 0.531 -2.09 1.31 -- -0.7 0.786 1.35 6 5.06 --
136.51 0.548 7.95 -2.45 0.468 -1.97 -- 1.36 -0.712 2.93 0.8879 11 4.43 --
143.23 0.561 7.95 -2.43 0.487 -2.02 -- -- -0.708 2.2 1.426 6 4.75 --
138.47 0.551 7.95 -2.43 -- -1.67 -- 1.3 -0.697 -- 0.68 7 5 --
188.4 0.643 7.9 -2.3 1.71 -- -1.39 -- -0.654 11.7 -- -- -- --
196.76 0.657 7.91 -2.36 1.71 -- -- -- -0.66 11.7 -- -- -- --
147.25 0.568 7.95 -2.41 -- -1.67 -- -- -0.692 -- 0.8897 3 5.11 --
298.22 0.809 7.89 -- 0.302 -1.86 -- -- -0.434 3.09 1.426 6 4.75 --
381.25 0.912 7.95 -2.41 -- -- -- -- -0.681 -- -- -- -- --
343.66 0.867 7.85 -- 1.74 -- -- -- -0.397 11.8 -- -- -- --
300.86 0.81 7.89 -- -- -1.68 -- -- -0.429 -- 1.68 7 5.12 --
534.49 1.08 7.89 -- -- -- -- -- -0.413 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.82 radiation 1.0 90 < th dose dependent rect. 5 23
2 133.86 radiation 1.0 90 < th dose dependent rect. 7 21
3 134.41 radiation 1.0 90 < th dose dependent rect. 10 18
10 135.44 radiation 1.0 270 < th dose independent rect. 8 19
11 135.72 radiation 1.0 10 < th dose dependent sin 10 NA
22 137.31 humidity 50.0 90 > th dose dependent rect. 11 17
29 137.51 radiation 1.0 10 < th dose dependent rect. 19 23
32 137.79 precipitation 0.1 90 < th dose independent rect. 4 15
33 137.79 precipitation 0.1 90 < th dose dependent rect. 4 15
34 138.02 temperature 15.0 90 > th dose independent rect. 4 15
43 139.00 radiation 1.0 10 < th dose independent sin 11 NA
44 139.08 radiation 1.0 10 > th dose independent sin 11 NA
49 139.29 temperature 10.0 90 > th dose dependent rect. 4 15
58 139.90 humidity 50.0 90 > th dose dependent rect. 19 9
59 139.93 humidity 50.0 90 > th dose dependent rect. 9 19
60 139.94 temperature 30.0 90 < th dose independent rect. 9 19
63 140.14 humidity 70.0 90 > th dose independent rect. 19 9
66 140.30 humidity 50.0 90 > th dose independent rect. 9 19
68 140.41 wind 9.0 90 < th dose independent rect. 19 9
69 140.43 temperature 10.0 90 > th dose independent rect. 19 9
70 140.43 temperature 30.0 90 < th dose independent rect. 19 9
71 140.43 humidity 50.0 90 > th dose independent rect. 19 9
73 140.43 atmosphere 995.0 90 > th dose independent rect. 19 9
74 140.43 radiation 1.0 90 < th dose independent rect. 19 9
80 140.43 atmosphere 1015.0 90 < th dose independent rect. 4 15
81 140.43 radiation 1.0 90 < th dose dependent rect. 19 9
87 140.50 radiation 1.0 90 < th dose dependent rect. 17 11
93 141.03 humidity 50.0 270 > th dose independent rect. 6 22
96 141.08 precipitation 0.1 90 < th dose independent rect. 19 9
97 141.08 precipitation 0.1 90 < th dose dependent rect. 19 9
99 141.14 temperature 10.0 270 > th dose dependent rect. 13 9
101 141.55 wind 9.0 90 < th dose independent rect. 4 15
103 141.67 radiation 1.0 10 > th dose independent rect. 17 16
105 141.68 temperature 10.0 10 > th dose dependent rect. 5 15
106 141.77 humidity 50.0 10 > th dose dependent rect. 10 19
111 141.85 temperature 30.0 90 < th dose independent rect. 11 17
141 143.05 radiation 40.0 90 < th dose independent rect. 4 15
148 143.45 humidity 50.0 270 > th dose independent rect. 7 20
153 143.62 radiation 1.0 10 < th dose independent rect. 19 22
155 143.70 atmosphere 1010.0 90 < th dose independent rect. 19 9
158 143.72 atmosphere 995.0 90 > th dose independent rect. 9 19
160 143.81 wind 9.0 90 < th dose dependent rect. 19 9
161 143.88 humidity 60.0 90 > th dose dependent rect. 15 13
171 144.09 humidity 70.0 10 > th dose independent rect. 19 10
183 144.45 precipitation 0.1 90 < th dose independent rect. 4 5
184 144.45 precipitation 0.1 90 < th dose dependent rect. 4 5
188 144.58 wind 9.0 90 < th dose independent rect. 9 19
192 144.64 wind 9.0 90 < th dose independent rect. 4 5
193 144.64 temperature 10.0 90 > th dose independent rect. 4 5
195 144.64 humidity 50.0 90 > th dose independent rect. 4 5
196 144.64 atmosphere 995.0 90 > th dose independent rect. 4 5
197 144.64 atmosphere 1015.0 90 < th dose independent rect. 4 5
198 144.64 temperature 10.0 90 > th dose independent rect. 9 19
201 144.73 temperature 30.0 90 < th dose independent rect. 4 5
203 144.74 wind 9.0 90 < th dose dependent rect. 4 5
205 144.75 temperature 30.0 270 < th dose independent rect. 17 10
207 144.78 radiation 30.0 90 < th dose independent rect. 4 7
210 144.87 humidity 50.0 10 > th dose dependent rect. 19 10
214 144.97 radiation 40.0 90 < th dose independent rect. 4 5
217 145.04 temperature 10.0 90 > th dose dependent rect. 4 19
219 145.11 humidity 60.0 270 > th dose independent rect. 17 10
245 145.73 wind 9.0 270 < th dose dependent rect. 4 2
254 145.95 precipitation 0.1 270 < th dose independent rect. 4 2
255 145.95 precipitation 0.1 270 < th dose dependent rect. 4 2
266 146.24 wind 7.0 270 < th dose independent rect. 4 2
272 146.32 temperature 20.0 10 > th dose independent rect. 5 15
280 146.43 temperature 10.0 270 > th dose independent rect. 4 2
282 146.43 temperature 30.0 270 < th dose independent rect. 4 2
283 146.43 humidity 50.0 270 > th dose independent rect. 4 2
286 146.43 atmosphere 995.0 270 > th dose independent rect. 4 2
287 146.43 atmosphere 1015.0 270 < th dose independent rect. 4 2
288 146.43 radiation 20.0 270 < th dose independent rect. 4 2
291 146.43 temperature 10.0 270 > th dose independent rect. 6 22
310 146.80 atmosphere 995.0 90 > th dose independent rect. 4 15
322 146.97 atmosphere 1015.0 90 < th dose independent rect. 9 19
329 147.05 radiation 40.0 270 < th dose dependent rect. 4 2
333 147.14 radiation 40.0 90 < th dose dependent rect. 4 7
334 147.14 radiation 1.0 10 < th dose dependent rect. 19 17
345 147.37 temperature 10.0 10 > th dose dependent rect. 5 18
349 147.42 wind 9.0 270 < th dose independent rect. 6 22
372 147.79 radiation 1.0 10 < th dose dependent rect. 19 13
376 147.80 precipitation 0.1 90 < th dose independent rect. 9 19
377 147.80 precipitation 0.1 90 < th dose dependent rect. 9 19
380 147.83 radiation 1.0 90 > th dose independent rect. 17 13
385 147.87 radiation 1.0 10 < th dose dependent rect. 19 11
391 147.97 temperature 10.0 270 > th dose dependent rect. 4 2
405 148.18 temperature 10.0 90 > th dose dependent rect. 4 5
413 148.28 humidity 70.0 90 > th dose independent rect. 13 15
416 148.31 atmosphere 995.0 270 > th dose independent rect. 6 22
426 148.41 humidity 50.0 270 > th dose dependent rect. 4 2
456 148.83 atmosphere 1015.0 90 < th dose dependent rect. 4 5
457 148.84 radiation 40.0 90 < th dose dependent rect. 4 5
459 148.84 temperature 10.0 270 > th dose dependent rect. 2 20
477 149.07 humidity 50.0 90 > th dose dependent rect. 4 5
478 149.08 precipitation 0.1 10 < th dose independent rect. 5 14
479 149.08 precipitation 0.1 10 < th dose dependent rect. 5 14
522 149.48 temperature 10.0 1440 > th dose independent rect. 20 9
525 149.48 temperature 30.0 1440 < th dose independent rect. 20 9
529 149.48 humidity 50.0 1440 > th dose independent rect. 20 9
535 149.48 atmosphere 995.0 1440 > th dose independent rect. 20 9
536 149.48 radiation 20.0 1440 < th dose independent rect. 20 9
548 149.48 temperature 10.0 1440 > th dose independent rect. 5 15
554 149.52 atmosphere 995.0 10 > th dose independent rect. 9 20
569 149.68 wind 9.0 10 < th dose dependent rect. 5 4
594 149.89 radiation 1.0 10 < th dose independent rect. 19 17
600 149.97 wind 9.0 10 < th dose independent rect. 19 10
611 149.98 temperature 10.0 270 > th dose independent rect. 7 20
644 150.12 temperature 10.0 10 > th dose independent rect. 19 10
645 150.12 temperature 30.0 10 < th dose independent rect. 19 10
646 150.12 humidity 50.0 10 > th dose independent rect. 19 10
648 150.12 atmosphere 995.0 10 > th dose independent rect. 19 10
649 150.12 radiation 1.0 10 < th dose independent rect. 19 10
654 150.12 temperature 10.0 10 > th dose independent rect. 5 14
656 150.12 atmosphere 1015.0 10 < th dose independent rect. 5 14
667 150.24 radiation 1.0 10 > th dose independent rect. 5 4
703 150.36 wind 9.0 10 < th dose independent rect. 5 14
715 150.46 precipitation 0.1 10 < th dose independent rect. 5 4
716 150.46 precipitation 0.1 10 < th dose dependent rect. 5 4
725 150.52 radiation 1.0 10 < th dose independent rect. 19 13
772 150.71 wind 7.0 10 < th dose independent rect. 5 4
774 150.71 temperature 10.0 10 > th dose independent rect. 5 4
776 150.71 temperature 30.0 10 < th dose independent rect. 5 4
777 150.71 humidity 50.0 10 > th dose independent rect. 5 4
779 150.71 atmosphere 995.0 10 > th dose independent rect. 5 4
780 150.71 atmosphere 1015.0 10 < th dose independent rect. 5 4
781 150.71 temperature 10.0 10 > th dose independent rect. 9 20
800 150.79 radiation 40.0 10 < th dose independent rect. 5 5
815 150.92 temperature 30.0 90 < th dose dependent rect. 11 17
829 151.03 humidity 50.0 10 > th dose independent rect. 9 20
844 151.13 precipitation 0.1 10 < th dose independent rect. 19 10
845 151.13 precipitation 0.1 10 < th dose dependent rect. 19 10
848 151.15 precipitation 0.1 270 < th dose independent rect. 2 6
850 151.15 precipitation 0.1 270 < th dose dependent rect. 2 6
870 151.22 wind 9.0 10 < th dose independent rect. 9 20
892 151.29 radiation 40.0 10 < th dose independent rect. 5 14
909 151.38 wind 7.0 270 < th dose independent rect. 2 6
911 151.39 radiation 20.0 270 < th dose independent rect. 2 7
913 151.42 radiation 40.0 270 < th dose independent rect. 2 6
933 151.52 precipitation 0.1 270 < th dose independent rect. 14 17
934 151.52 precipitation 0.1 270 < th dose dependent rect. 14 17
937 151.55 temperature 10.0 270 > th dose dependent rect. 13 19
939 151.56 temperature 10.0 270 > th dose independent rect. 2 6
941 151.56 temperature 30.0 270 < th dose independent rect. 2 6
942 151.56 humidity 50.0 270 > th dose independent rect. 2 6
944 151.56 atmosphere 995.0 270 > th dose independent rect. 2 6
945 151.56 atmosphere 1015.0 270 < th dose independent rect. 2 6
957 151.60 atmosphere 1015.0 270 < th dose dependent rect. 4 2
983 151.79 radiation 40.0 90 < th dose dependent rect. 4 15
999 151.86 temperature 30.0 10 < th dose dependent rect. 10 19