Os04g0407500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF868, plant family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0407500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein of unknown function DUF868, plant family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.55 | 0.344 | 10.2 | 1.28 | 0.884 | -1.05 | -0.206 | -0.949 | 0.42 | 22.8 | 21.92 | 12 | -- | -- |
| 54.29 | 0.343 | 10.2 | 1.2 | 0.885 | -0.842 | -0.384 | -- | 0.396 | 22.8 | 22.57 | 10 | -- | -- |
| 53.63 | 0.341 | 10.2 | 1.3 | 0.893 | -1.01 | -- | -1 | 0.419 | 22.8 | 22.3 | 11 | -- | -- |
| 54.88 | 0.345 | 10.2 | 1.21 | 0.881 | -0.814 | -- | -- | 0.402 | 22.7 | 22.61 | 10 | -- | -- |
| 95.02 | 0.454 | 10.2 | 1.29 | -- | -0.935 | -- | -1.04 | 0.439 | -- | 21.8 | 547 | -- | -- |
| 62.1 | 0.369 | 10.2 | 1.36 | 0.785 | -- | -0.325 | -- | 0.498 | 22.5 | -- | -- | -- | -- |
| 62.53 | 0.37 | 10.2 | 1.37 | 0.787 | -- | -- | -- | 0.499 | 22.4 | -- | -- | -- | -- |
| 90.36 | 0.443 | 10.2 | 1.17 | -- | -0.776 | -- | -- | 0.343 | -- | 28.91 | 756 | -- | -- |
| 90.77 | 0.446 | 10.2 | -- | 0.953 | -1.28 | -- | -- | 0.214 | 23 | 22.79 | 73 | -- | -- |
| 100.45 | 0.468 | 10.2 | 1.38 | -- | -- | -- | -- | 0.502 | -- | -- | -- | -- | -- |
| 112.08 | 0.495 | 10.2 | -- | 0.796 | -- | -- | -- | 0.346 | 22.6 | -- | -- | -- | -- |
| 122.14 | 0.515 | 10.2 | -- | -- | -1.24 | -- | -- | 0.127 | -- | 28.5 | 787 | -- | -- |
| 151.01 | 0.574 | 10.2 | -- | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 11 |
| 9 | 51.91 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 18 |
| 16 | 52.12 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 10 |
| 20 | 52.17 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 21 |
| 31 | 52.31 | temperature | 25 | 90 | < th | dose dependent | sin | 13 | NA |
| 36 | 52.40 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 23 |
| 39 | 52.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 10 |
| 40 | 52.44 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 51 | 52.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 9 |
| 112 | 52.94 | temperature | 10 | 30 | > th | dose dependent | sin | 11 | NA |
| 179 | 53.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 187 | 53.30 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 10 |
| 236 | 53.52 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 15 |
| 291 | 53.74 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 23 |
| 301 | 53.77 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 306 | 53.79 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 21 |
| 323 | 53.88 | temperature | 20 | 90 | > th | dose independent | sin | 15 | NA |
| 356 | 54.02 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 13 |
| 375 | 54.07 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 8 |
| 396 | 54.13 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 11 |
| 441 | 54.23 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 11 |
| 462 | 54.26 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 19 |
| 487 | 54.30 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 18 |
| 505 | 54.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 526 | 54.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 537 | 54.40 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 9 |
| 552 | 54.42 | temperature | 20 | 90 | < th | dose independent | sin | 14 | NA |
| 606 | 54.47 | temperature | 20 | 10 | < th | dose independent | sin | 13 | NA |
| 693 | 54.54 | temperature | 20 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 697 | 54.55 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 16 |
| 698 | 54.55 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 18 |
| 851 | 54.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 18 |
| 855 | 54.65 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 11 |
| 946 | 54.70 | temperature | 20 | 10 | < th | dose dependent | no | NA | NA |
| 986 | 54.71 | temperature | 20 | 10 | < th | dose dependent | rect. | 19 | 23 |