BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0407500 Os04g0407500|Os04g0407500
(185 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27770.1 | chr2:11833089-11834051 REVERSE LENGTH=321 82 2e-16
AT2G04220.1 | chr2:1445401-1446324 FORWARD LENGTH=308 72 1e-13
AT4G12690.1 | chr4:7480896-7481753 FORWARD LENGTH=286 70 6e-13
AT5G48270.1 | chr5:19564744-19565712 REVERSE LENGTH=323 68 3e-12
AT5G11000.1 | chr5:3479166-3480335 REVERSE LENGTH=390 66 1e-11
AT2G36470.1 | chr2:15299385-15300368 REVERSE LENGTH=328 65 2e-11
AT5G28150.1 | chr5:10135826-10136695 FORWARD LENGTH=290 61 3e-10
AT3G04860.1 | chr3:1339349-1340218 REVERSE LENGTH=290 59 1e-09
AT3G13229.1 | chr3:4268566-4269435 REVERSE LENGTH=290 57 6e-09
AT2G25200.1 | chr2:10736580-10737644 REVERSE LENGTH=355 48 3e-06
>AT2G27770.1 | chr2:11833089-11834051 REVERSE LENGTH=321
Length = 320
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 17/125 (13%)
Query: 20 MARRRERFVGCGC-WSTRARFLESGAEHDIVVALDGDAEAW----------VTVDGRKVV 68
+ R+E F G +ST+ RF+E+G H+IV+ + + E V +D + V+
Sbjct: 178 LVSRQEHFTGNNTFYSTKVRFVETGDSHEIVIRCNKETEGLKQSNHYPVLSVCIDKKTVI 237
Query: 69 QLRRLRWNFRGSHTLFLDGGAPVDMTWDLHGWLFHXXXXXXXXXXXXVFTFQTR-GASET 127
+++RL+WNFRG+ T+FLD G VD+ WD+H W F VF F+TR G +
Sbjct: 238 KVKRLQWNFRGNQTIFLD-GLLVDLMWDVHDWFF----SNQGACGRAVFMFRTRNGLDSS 292
Query: 128 KFWIE 132
+ W+E
Sbjct: 293 RLWLE 297
>AT2G04220.1 | chr2:1445401-1446324 FORWARD LENGTH=308
Length = 307
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 5/84 (5%)
Query: 23 RRERFVGCGCWSTRARFLESGAEHDIVVALD----GDAEAWVTVDGRKVVQLRRLRWNFR 78
++E G C++TRA+F + EH+I+V + E W+++DG ++Q++ L+W FR
Sbjct: 159 KKENVFGKKCFTTRAKFYDRKKEHEIIVESSTSGPKEPEMWISIDGIVLIQVKNLQWKFR 218
Query: 79 GSHTLFLDGGAPVDMTWDLHGWLF 102
G+ T+ +D PV + WD++ WLF
Sbjct: 219 GNQTVLVD-KQPVQVFWDVYDWLF 241
>AT4G12690.1 | chr4:7480896-7481753 FORWARD LENGTH=286
Length = 285
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 15 IAGSRMARRRERFVGCGCWSTRARFLESGAEHDIVVALDGDA---EAWVTVDGRKVVQLR 71
+ + + ++E G +STRA+F + EH+IVV A E W++VDG +VQ+R
Sbjct: 147 LVDAALFYKKENVFGKKIFSTRAKFHDRKREHEIVVESSTGAKEPEMWISVDGIVLVQVR 206
Query: 72 RLRWNFRGSHTLFLDGGAPVDMTWDLHGWLF 102
L+W FRG+ T+ +D PV + WD++ WLF
Sbjct: 207 NLQWKFRGNQTVLVD-KEPVQVFWDVYDWLF 236
>AT5G48270.1 | chr5:19564744-19565712 REVERSE LENGTH=323
Length = 322
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 23 RRERFVGCGCWSTRARFLESGAEHDIVVALDGDA---EAWVTVDGRKVVQLRRLRWNFRG 79
++E G +STRARF E EH++VV A E W++VDG VV ++ L+W FRG
Sbjct: 173 KKESIFGKKTFSTRARFDEQRKEHEVVVESSNGAAEPEMWISVDGIVVVNVKNLQWKFRG 232
Query: 80 SHTLFLDGGAPVDMTWDLHGWLF 102
+ + +D PV + +D+H WLF
Sbjct: 233 NQMVMVD-RTPVMVYYDVHDWLF 254
>AT5G11000.1 | chr5:3479166-3480335 REVERSE LENGTH=390
Length = 389
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 1 MSRGYVERLHGGIPIAGSRMARRRERFVGCGCWSTRARFLESGAEHDIVVALDGDAEAWV 60
+ Y P + R+E G ++T+ARF E I +D DA+
Sbjct: 152 VKEAYARAKSAKPPTNPQALLLRKEHVFGARVFTTKARFGGKNREISIDCRVDEDAKLCF 211
Query: 61 TVDGRKVVQLRRLRWNFRGSHTLFLDGGAPVDMTWDLHGWLFH 103
+VD ++V+Q++RLRW FRG+ + +D G V ++WD++ WLF
Sbjct: 212 SVDSKQVLQIKRLRWKFRGNEKVEID-GVHVQISWDVYNWLFQ 253
>AT2G36470.1 | chr2:15299385-15300368 REVERSE LENGTH=328
Length = 327
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 19/97 (19%)
Query: 23 RRERFVGCGCW-STRARFLESGAEHDIVV----------------ALDGDAEAWVTVDGR 65
+ ERF G CW +T+A+F + G +H+I + + V VD R
Sbjct: 154 KTERFSGT-CWLTTKAQFSDVGRKHEIQIQCGGGGGGGGEEGYLWKVKSPETMSVYVDKR 212
Query: 66 KVVQLRRLRWNFRGSHTLFLDGGAPVDMTWDLHGWLF 102
KV +++L+WNFRG+ T+F DG +DM WDLH W +
Sbjct: 213 KVFSVKKLKWNFRGNQTMFFDGML-IDMMWDLHDWFY 248
>AT5G28150.1 | chr5:10135826-10136695 FORWARD LENGTH=290
Length = 289
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 1 MSRGYVERLHGGIPIAGSRMARRRERFVGCGCWSTRARFLESGAEHDIVVALDG---DAE 57
M + ++ + G+ ++E G ++T+A+ G HD+++ D D
Sbjct: 136 MKKEAFKKTNASPSSLGAVFIAKKEHVFGKRVFATKAQLFADGKFHDLLIECDTNVTDPC 195
Query: 58 AWVTVDGRKVVQLRRLRWNFRGSHTLFLDGGAPVDMTWDLHGWLF 102
V VDG+ ++Q++RL+W FRG+ T+ ++ V++ WD+H WLF
Sbjct: 196 LVVRVDGKTLLQVKRLKWKFRGNDTIVVN-KMTVEVLWDVHSWLF 239
>AT3G04860.1 | chr3:1339349-1340218 REVERSE LENGTH=290
Length = 289
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 17 GSRMARRRERFVGCGCWSTRARFLESGAEHDIVVALD---GDAEAWVTVDGRKVVQLRRL 73
G+ ++E G ++T+A+F G HD+V+ D D V VDG+ ++Q++RL
Sbjct: 153 GAVFIAKKEHVFGKRTFATKAQFSGDGKTHDLVIECDTSLSDPCLIVRVDGKILMQVQRL 212
Query: 74 RWNFRGSHTLFLDGGAPVDMTWDLHGWLF 102
W FRG+ T+ ++ V++ WD+H W F
Sbjct: 213 HWKFRGNDTIIVN-RISVEVLWDVHSWFF 240
>AT3G13229.1 | chr3:4268566-4269435 REVERSE LENGTH=290
Length = 289
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 20 MARRRERFVGCGCWSTRARFL--ESGAEHDIVV--ALDG--DAEAWVTVDGRKVVQLRRL 73
+ ++E G + TR F ES E+++V+ +L G D E W+TVDG +++ L
Sbjct: 136 LVSKQEHVHGKRVFYTRTAFGGGESRRENEVVIETSLSGPSDPEMWITVDGVPAIRIMNL 195
Query: 74 RWNFRGSHTLFLDGGAPVDMTWDLHGWLFHXXXXXXXXXXXXVFTFQTRGASETK 128
W FRG+ + + G +++ WD+H WLF +F F+ + E+K
Sbjct: 196 NWRFRGNEVVTVSDGVSLEIFWDVHDWLFE-----PSGSSSGLFVFKPKAGFESK 245
>AT2G25200.1 | chr2:10736580-10737644 REVERSE LENGTH=355
Length = 354
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 20 MARRRERFVGCGCWSTRARFLESGAEHDI-VVALDGDAEAWVTVDGRKVVQLRRLRWNFR 78
+ ++E G +ST+ E I V ++ DA +VD + V+++ +L+W FR
Sbjct: 175 LVSKKENLFGNRVYSTKIMIQGKLREISIDVKVVNDDASLRFSVDDKSVLKISQLQWKFR 234
Query: 79 GSHTLFLDGGAPVDMTWDLHGWLF 102
G+ + +D G + ++WD+ WLF
Sbjct: 235 GNTKIVID-GVTIQISWDVFNWLF 257
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.140 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,255,462
Number of extensions: 107613
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 10
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 108 (46.2 bits)