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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0108400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF868, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0193) R2 : 0.000878
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0258 (0.0407) R2dN8 : 0.00113 R2N8 : 0.000878
σ : 0.364
deviance : 60.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.35 0.346 3.31 0.0866 0.239 -0.0598 -0.447 -1.34 -0.0237 5.42 70.6 5846 -- --
56.4 0.35 3.31 0.0798 0.245 -0.164 -0.391 -- -0.0551 5.06 85 7307 -- --
54.68 0.344 3.31 0.0925 0.246 -0.0348 -- -1.36 -0.0179 5.55 70.83 6342 -- --
56.62 0.35 3.31 0.0555 0.269 -0.223 -- -- -0.107 5.48 85.39 7305 -- --
57.42 0.353 3.31 0.099 -- 0.0526 -- -1.44 -0.000276 -- 70 6342 -- --
57.26 0.355 3.3 0.0026 0.244 -- -0.465 -- -0.0327 5.3 -- -- -- --
57.79 0.356 3.3 0.00221 0.241 -- -- -- -0.0305 5.46 -- -- -- --
59.51 0.359 3.33 0.0474 -- -0.263 -- -- -0.139 -- 85.47 6979 -- --
56.59 0.35 3.32 -- 0.248 -0.243 -- -- -0.14 5.5 85 7307 -- --
60.82 0.364 3.31 0.0103 -- -- -- -- -0.0246 -- -- -- -- --
57.79 0.356 3.3 -- 0.241 -- -- -- -0.0308 5.46 -- -- -- --
59.59 0.36 3.33 -- -- -0.25 -- -- -0.138 -- 85.58 6979 -- --
60.83 0.364 3.31 -- -- -- -- -- -0.0258 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.01 radiation 10.0 30 > th dose independent rect. 7 1
2 52.04 humidity 80.0 10 < th dose independent rect. 6 2
4 52.25 wind 9.0 14400 > th dose independent rect. 1 1
6 52.25 wind 9.0 14400 > th dose dependent rect. 1 1
10 52.45 humidity 80.0 10 < th dose independent rect. 23 9
30 52.81 humidity 80.0 14400 < th dose dependent rect. 3 6
32 52.83 radiation 10.0 10 > th dose independent rect. 16 16
35 52.90 wind 7.0 14400 > th dose dependent rect. 9 1
38 53.01 wind 7.0 14400 > th dose independent rect. 9 1
39 53.01 wind 7.0 14400 < th dose independent rect. 9 1
45 53.07 humidity 80.0 14400 > th dose independent rect. 8 1
49 53.22 atmosphere 1000.0 30 > th dose independent rect. 3 23
52 53.26 atmosphere 1005.0 90 > th dose dependent rect. 2 1
57 53.30 humidity 70.0 14400 > th dose independent rect. 4 5
62 53.30 atmosphere 1005.0 10 > th dose dependent rect. 2 2
68 53.34 humidity 70.0 14400 < th dose independent rect. 8 1
80 53.47 radiation 1.0 43200 < th dose dependent rect. 3 1
82 53.49 humidity 80.0 14400 < th dose independent rect. 7 3
100 53.58 humidity 60.0 43200 < th dose independent rect. 11 1
145 53.82 humidity 90.0 90 < th dose dependent rect. 2 6
161 53.85 humidity 50.0 14400 > th dose dependent rect. 8 1
166 53.87 temperature 25.0 90 > th dose dependent rect. 1 2
169 53.88 radiation 1.0 4320 < th dose dependent rect. 3 1
173 53.92 temperature 25.0 90 > th dose independent rect. 1 1
188 53.95 wind 9.0 1440 < th dose independent rect. 3 1
189 53.95 temperature 10.0 1440 > th dose independent rect. 3 1
192 53.95 temperature 30.0 1440 < th dose independent rect. 3 1
196 53.95 humidity 50.0 1440 > th dose independent rect. 3 1
205 53.95 atmosphere 995.0 1440 > th dose independent rect. 3 1
206 53.95 radiation 1.0 1440 < th dose independent rect. 3 1
227 53.95 temperature 10.0 1440 > th dose independent rect. 4 23
238 53.97 humidity 90.0 10 < th dose dependent rect. 7 1
241 53.99 atmosphere 1005.0 90 > th dose independent rect. 2 1
245 54.01 wind 3.0 30 < th dose dependent rect. 2 1
246 54.01 humidity 60.0 14400 < th dose dependent rect. 12 1
250 54.04 wind 3.0 30 < th dose independent rect. 2 1
262 54.06 humidity 90.0 30 > th dose independent rect. 2 1
282 54.09 humidity 50.0 30 > th dose dependent rect. 2 1
290 54.10 temperature 10.0 30 > th dose independent rect. 2 1
292 54.10 temperature 30.0 30 < th dose independent rect. 2 1
293 54.10 humidity 50.0 30 > th dose independent rect. 2 1
297 54.10 atmosphere 1010.0 30 < th dose independent rect. 2 1
299 54.10 radiation 1.0 30 < th dose independent rect. 2 1
304 54.10 precipitation 0.1 30 < th dose independent rect. 2 1
305 54.10 temperature 10.0 30 > th dose independent rect. 3 23
306 54.10 radiation 1.0 30 < th dose dependent rect. 2 1
311 54.10 precipitation 0.1 30 < th dose dependent rect. 2 1
326 54.15 atmosphere 1015.0 30 < th dose dependent rect. 2 1
348 54.20 wind 7.0 14400 > th dose dependent rect. 23 3
356 54.22 humidity 70.0 4320 > th dose independent rect. 10 2
359 54.22 precipitation 0.1 30 < th dose independent rect. 3 23
361 54.22 temperature 30.0 30 < th dose dependent rect. 2 1
362 54.22 precipitation 0.1 30 < th dose dependent rect. 3 23
363 54.23 wind 7.0 14400 > th dose independent rect. 23 3
375 54.26 wind 1.0 30 > th dose independent rect. 2 1
376 54.26 wind 7.0 14400 < th dose independent rect. 23 3
456 54.31 radiation 10.0 1440 < th dose dependent rect. 11 1
473 54.33 humidity 60.0 14400 < th dose dependent sin 3 NA
561 54.38 humidity 90.0 90 < th dose independent rect. 2 2
572 54.39 wind 1.0 14400 < th dose dependent rect. 2 1
583 54.41 humidity 60.0 14400 < th dose independent rect. 19 18
595 54.42 humidity 50.0 4320 > th dose dependent rect. 11 1
613 54.42 humidity 60.0 14400 < th dose dependent rect. 10 23
679 54.44 humidity 80.0 14400 < th dose dependent sin 7 NA
682 54.44 humidity 60.0 14400 < th dose dependent no NA NA
783 54.45 wind 5.0 14400 < th dose independent rect. 11 1
786 54.45 humidity 70.0 4320 > th dose independent rect. 8 7
795 54.46 atmosphere 1000.0 10 > th dose independent rect. 8 23
817 54.47 humidity 50.0 4320 > th dose dependent rect. 3 12
819 54.47 humidity 50.0 4320 > th dose dependent rect. 23 16
820 54.48 humidity 50.0 14400 > th dose independent rect. 15 1
837 54.48 wind 1.0 14400 < th dose dependent rect. 22 1
870 54.49 humidity 50.0 4320 > th dose dependent rect. 3 10
934 54.51 precipitation 0.1 14400 > th dose independent rect. 23 19
948 54.51 radiation 10.0 30 < th dose dependent rect. 3 23
961 54.52 precipitation 0.1 14400 > th dose independent rect. 24 17
962 54.52 precipitation 0.1 14400 < th dose independent rect. 24 17
968 54.52 radiation 1.0 10 > th dose dependent rect. 7 1
984 54.52 precipitation 0.1 14400 < th dose dependent rect. 24 17
989 54.53 humidity 70.0 4320 > th dose independent sin 4 NA