BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0108400 Os05g0108400|AK119954
(306 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0108400 Protein of unknown function DUF868, plant fami... 496 e-141
Os01g0909400 Protein of unknown function DUF868, plant fami... 196 2e-50
Os03g0806700 Protein of unknown function DUF868, plant fami... 142 2e-34
Os07g0572300 Protein of unknown function DUF868, plant fami... 140 8e-34
Os02g0198800 Protein of unknown function DUF868, plant fami... 122 4e-28
>Os05g0108400 Protein of unknown function DUF868, plant family protein
Length = 306
Score = 496 bits (1278), Expect = e-141, Method: Compositional matrix adjust.
Identities = 251/306 (82%), Positives = 251/306 (82%)
Query: 1 MQDHVVVQQRSGDQPAPSCDIAADEIPVNGHKPGRAVTASVYRAKIAGHSRVLTVSWSRD 60
MQDHVVVQQRSGDQPAPSCDIAADEIPVNGHKPGRAVTASVYRAKIAGHSRVLTVSWSRD
Sbjct: 1 MQDHVVVQQRSGDQPAPSCDIAADEIPVNGHKPGRAVTASVYRAKIAGHSRVLTVSWSRD 60
Query: 61 MLSHSFAVSVTGVDGASAECRVDLRPWQFWRRAGSRRVELAGTAPATVRVMWDLRRARFG 120
MLSHSFAVSVTGVDGASAECRVDLRPWQFWRRAGSRRVELAGTAPATVRVMWDLRRARFG
Sbjct: 61 MLSHSFAVSVTGVDGASAECRVDLRPWQFWRRAGSRRVELAGTAPATVRVMWDLRRARFG 120
Query: 121 AGLPEPRSXXXXXXXXXXXXXXXXXDMRKDXXXXXXXXXXXXXXXXXXXXXXEHVFGKRR 180
AGLPEPRS DMRKD EHVFGKRR
Sbjct: 121 AGLPEPRSGYYVAVEAAGEVVLVVGDMRKDALRRASPRAAPAACDAVPVARREHVFGKRR 180
Query: 181 FAAKARFHDQGTVHDIAIECXXXXXXXDADMEMTIAIDGEEAVQVKHLQWKFRGNQSVTF 240
FAAKARFHDQGTVHDIAIEC DADMEMTIAIDGEEAVQVKHLQWKFRGNQSVTF
Sbjct: 181 FAAKARFHDQGTVHDIAIECGGGGEGGDADMEMTIAIDGEEAVQVKHLQWKFRGNQSVTF 240
Query: 241 SRAKVEIYWDVHDWLFSAGMRPALFIFRPIVLXXXXXXXXXMLLDGSPPPPPATGFCLYL 300
SRAKVEIYWDVHDWLFSAGMRPALFIFRPIVL MLLDGSPPPPPATGFCLYL
Sbjct: 241 SRAKVEIYWDVHDWLFSAGMRPALFIFRPIVLSSASAPAAAMLLDGSPPPPPATGFCLYL 300
Query: 301 YAWKLD 306
YAWKLD
Sbjct: 301 YAWKLD 306
>Os01g0909400 Protein of unknown function DUF868, plant family protein
Length = 325
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 165/328 (50%), Gaps = 49/328 (14%)
Query: 17 PSCDIAAD---EIPVNGHKPG-----RAVTASVYRAKIAGHSRVLTVSWSRDMLSHSFAV 68
PSC + + +IP +G ++ VYRA+I+GH R++TV+W R++L+H +V
Sbjct: 9 PSCFSSGEKLPDIPSSGTAAAAAAARQSAVTLVYRAEISGHRRLVTVTWCRNLLTHGLSV 68
Query: 69 SVTGVDG------------------------------ASAECRVDLRPWQFWRRAGSRRV 98
S+ G G + + C+V+++PW FWR+ G+++
Sbjct: 69 SIEGSAGNGKDKIGREYGEAAVAATAADGGGGGGGGKSCSACKVEMQPWHFWRKYGAKQF 128
Query: 99 ELAGTAPATVRVMWDLRRARFGAGLPEPRSXXXXXXXXXXXXXXXXXDMRKDXXXXXXXX 158
++ G A + V+WDLR ARF + PEP S +++KD
Sbjct: 129 QVDGNA---IDVVWDLRSARF-SDEPEPLSDYYVAVVAGEEVVLLLGNLKKDAFRRTGSR 184
Query: 159 XXXXXXXXXXXXXXEHVFGKRRFAAKARFHDQGTVHDIAIECXXXXXXXDADMEMTIAID 218
EHVF K+RF KARF D+G +HDI+IEC D++M I ID
Sbjct: 185 PSLQDAVLVCKK--EHVFSKKRFVTKARFSDRGKLHDISIECSSSNLTGGTDVDMAIKID 242
Query: 219 GEEAVQVKHLQWKFRGNQSVTFSRAKVEIYWDVHDWLFSAGMRPALFIFRPIVLXXXXXX 278
G +V V+HLQWKFRGN+ ++ ++ KV++YWD HDWLF GMR ALFIF+P
Sbjct: 243 GCVSVLVRHLQWKFRGNECISINKLKVQVYWDAHDWLFGTGMRHALFIFKPEPPSPSPPG 302
Query: 279 XXXMLLDGSPPPPPATGFCLYLYAWKLD 306
+ FCL+LYAWK++
Sbjct: 303 ASSEF-----STDEYSDFCLFLYAWKVE 325
>Os03g0806700 Protein of unknown function DUF868, plant family protein
Length = 291
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 131/274 (47%), Gaps = 15/274 (5%)
Query: 35 RAVTASVYRAKIAGHSRVLTVSWSRDMLSHSFAVSVTGVDGASAEC--RVDLRPWQFWRR 92
+ + +Y+A+ +G V++V+WS+ ++ ++ GVD S +C + D++PW F ++
Sbjct: 31 QNLVTCLYQAQFSGRPCVISVTWSKSLMGQGLSI---GVDDLSNQCLCKADIKPWLFSKK 87
Query: 93 AGSRRVELAGTAPATVRVMWDLRRARFGAGLPEPRSXXXXXXXXXXXXXXXXXDMRKDXX 152
GS+R+++ + + WDL A+FGAG PEP DM+KD
Sbjct: 88 KGSKRLDVE---DGKIEIFWDLSGAKFGAG-PEPMEGFYVAVVFDLELILLLGDMKKDAY 143
Query: 153 XXXXXXXXXXXXXXXXXXXXEHVFGKRRFAAKARFHDQGTVHDIAIECXXXXXXXDADME 212
EH++GK+ + AKA+F + G HD+ IEC D
Sbjct: 144 RKTGANRPMLNAAFVARR--EHIYGKKIYTAKAQFCENGQFHDVVIECDTVSL---KDPC 198
Query: 213 MTIAIDGEEAVQVKHLQWKFRGNQSVTFSRAKVEIYWDVHDWLFSAGMRPALFIFRPIVL 272
+ I +D + +QVK L WKFRGNQ++ VE++WDVH WLF A+F+F+
Sbjct: 199 LEIRVDKKPVMQVKRLAWKFRGNQTILVDGLPVEVFWDVHSWLFGLTTSNAVFMFQTCQA 258
Query: 273 XXXXXXXXXMLLDGSPPPPPATGFCLYLYAWKLD 306
+ GF L LYAWKL+
Sbjct: 259 PEKSMPWSYSQV-FRESQLQGLGFSLILYAWKLE 291
>Os07g0572300 Protein of unknown function DUF868, plant family protein
Length = 284
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 133/281 (47%), Gaps = 27/281 (9%)
Query: 34 GRAVTASVYRAKIAGHSRVLTVSWSRDMLSHSFAVSVTGVDGASAEC--RVDLRPWQFWR 91
G+ + Y A++ G S +TV+WS+ + + +V+V D +S C + +++PW F +
Sbjct: 23 GQNMVQCTYLARLRGKSCSVTVTWSKMTMGQALSVAV---DDSSNRCLCKAEIKPWLFSK 79
Query: 92 RAGSRRVELAGTAPATVRVMWDLRRARFGAGLPEPRSXXXXXXXXXXXXXXXXXDMRKDX 151
R GS+ +E+ G A + ++WDL A+F AG PEP DMRKD
Sbjct: 80 RKGSKAMEVDGGA---LDIVWDLSSAKFAAG-PEPVEGFYVALVCDLEAVLVLGDMRKDG 135
Query: 152 XXXXXXXXXXXXXXXXXXXXXEHVFGKRRFAAKARFHDQGTVHDIAIECXXXXXXXDADM 211
EHV+GK+ ++AKARF D G +H I IEC D
Sbjct: 136 DHRVSSDVLASNAVMIARK--EHVYGKKVYSAKARFLDIGQLHHITIECDTSGLK---DP 190
Query: 212 EMTIAIDGEEAVQVKHLQWKFRGNQSVTFSRAKVEIYWDVHDWLFSAGMRPALFIFRPIV 271
+ I I + +QVK L WKFRGNQ+V VE+ WDVHDWLF + + A+F+F+
Sbjct: 191 SLEIRIGKKRVMQVKRLAWKFRGNQTVYVDGLPVEVLWDVHDWLFGSSNKCAVFLFQS-- 248
Query: 272 LXXXXXXXXXMLLDGSPPPPPAT------GFCLYLYAWKLD 306
LL S GF L L AWK +
Sbjct: 249 -----GQSMEKLLSRSCSQNEKELQAHRFGFTLILNAWKTE 284
>Os02g0198800 Protein of unknown function DUF868, plant family protein
Length = 328
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 123/260 (47%), Gaps = 33/260 (12%)
Query: 40 SVYRAKIAGHSRVLTVSWSRDMLSHSFAVSVTGVDGASAEC--------RVDLRPWQFWR 91
SVYRAKI G R +T W R +++ SF +S+ G G A +V+L+PW FW
Sbjct: 61 SVYRAKINGAPRHVTAVWHRTLINQSFTISIDGGGGGGAGAGDDGALSHKVELKPWPFWS 120
Query: 92 RAGSRRVELAGTAPATVRVMWDLRRARFGAGLPEPRSXXXXXXXXXXXXXXXXXDMRKDX 151
+ G++ +++ G + ++WDLR A+F A PEP + D +KD
Sbjct: 121 KRGAKTLDVDGD---RLDIVWDLRSAKFPASSPEPAAGYYVALVSRDEVVLLLGDGKKDA 177
Query: 152 XXXXXXXXXXXXXXXXXXXXXEHVFGKRRFAAKARFHDQGTVHDIAIECXXXXXXXDADM 211
E V G+R FAA+A H+I ++ +
Sbjct: 178 FKRTRSRPSLDDAVLVSRR--ESVSGRRTFAARAPLAAGRKDHEIVVDSAIAGPR---EP 232
Query: 212 EMTIAIDGEEAVQVKHLQWKFRGNQSVTFSRAKVEIYWDVHDWLFSAG-MRPALFIFRPI 270
EM I +DG V V+ LQWKFRGN++V ++ V++ WDVHDW+F+ G A+F+F+P
Sbjct: 233 EMRITVDGVVLVHVRSLQWKFRGNETVIVDQSPVQVLWDVHDWIFAGGPAAQAVFVFKP- 291
Query: 271 VLXXXXXXXXXMLLDGSPPP 290
G+PPP
Sbjct: 292 ---------------GAPPP 296
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,906,149
Number of extensions: 371979
Number of successful extensions: 1829
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1814
Number of HSP's successfully gapped: 7
Length of query: 306
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 205
Effective length of database: 11,762,187
Effective search space: 2411248335
Effective search space used: 2411248335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)