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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0909400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF868, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.97 (0.0673) R2 : 0.62
β1 : 0.0125 (0.247) R2dD : 3.91e-06 R2D : -0.00172
β2 : 6.97 (0.284) R2dC : 1.44 R2C : 0.193
β3 : -3.12 (0.238) R2dE : 0.408 R2E : -0.829
β4 : 2.62 (0.7) R2dD*C : 0.0118 R2D*C : 0.00523
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.532 (0.144) R2dN8 : 0.0154 R2N8 : -0.00493
σ : 1.25
deviance : 724.82
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_____
C
peak time of C : 20.6
E
wheather : humidity
threshold : 83.98
memory length : 755
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.8
open length of G : 3.17

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
722.54 1.26 5.97 0.0406 7.02 -3.18 3.86 -1.43 0.544 20.6 82.44 750 10.9 3.07
724.82 1.25 5.97 0.0125 6.97 -3.12 2.62 -- 0.532 20.6 83.98 755 10.8 3.17
741.28 1.27 5.97 -0.0401 6.95 -3.11 -- 1.04 0.553 20.6 83 754 10.8 3.23
746.52 1.27 5.96 -0.0777 6.91 -3.09 -- -- 0.531 20.6 83.01 753 10.8 3.27
1410.23 1.76 5.84 -0.191 -- -2.56 -- -1.13 0.207 -- 83 754 10.8 3.23
857.23 1.37 5.92 -0.259 4.12 -- 2.22 -- 0.341 22.1 -- -- -- --
876.66 1.39 5.92 -0.346 4.11 -- -- -- 0.336 22.1 -- -- -- --
1007.19 1.48 5.6 0.0707 -- -2.92 -- -- 0.661 -- 378.6 2095 4.57 0.883
746.68 1.27 5.96 -- 6.91 -3.09 -- -- 0.531 20.6 83 753 10.8 3.26
1895.87 2.03 5.81 -0.293 -- -- -- -- 0.34 -- -- -- -- --
879.82 1.39 5.91 -- 4.11 -- -- -- 0.375 22 -- -- -- --
1005.58 1.48 5.6 -- -- -2.92 -- -- 0.661 -- 378.6 2095 4.57 1.29
1898.14 2.03 5.8 -- -- -- -- -- 0.373 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 744.81 humidity 80.0 720 < th dose independent rect. 11 3
2 754.17 radiation 10.0 10 < th dose dependent rect. 6 16
3 755.76 radiation 30.0 10 < th dose dependent rect. 6 16
4 757.65 radiation 30.0 10 < th dose dependent rect. 8 14
7 760.54 radiation 20.0 10 < th dose independent rect. 8 14
8 761.08 radiation 10.0 270 > th dose independent rect. 9 6
19 763.37 humidity 80.0 90 < th dose independent rect. 11 6
21 764.02 radiation 20.0 10 < th dose independent rect. 6 16
25 764.55 radiation 30.0 30 < th dose dependent sin 18 NA
26 764.77 radiation 10.0 10 < th dose dependent sin 20 NA
31 765.78 atmosphere 1005.0 270 > th dose dependent rect. 24 8
32 765.86 radiation 30.0 30 < th dose dependent rect. 8 12
36 766.10 radiation 30.0 10 < th dose dependent rect. 23 23
43 767.25 humidity 80.0 10 < th dose independent rect. 12 4
52 767.90 radiation 10.0 270 > th dose independent rect. 10 4
93 770.74 radiation 1.0 30 > th dose dependent rect. 12 18
98 770.94 temperature 25.0 10 > th dose dependent rect. 12 4
108 771.48 radiation 10.0 270 > th dose independent rect. 11 2
120 772.17 atmosphere 1005.0 10 > th dose dependent rect. 1 9
126 772.46 wind 1.0 270 > th dose independent rect. 4 15
146 772.97 radiation 1.0 30 > th dose dependent sin 16 NA
153 773.15 humidity 80.0 10 < th dose independent rect. 10 8
159 773.42 temperature 25.0 30 > th dose independent rect. 12 16
171 773.85 radiation 1.0 30 > th dose dependent rect. 12 6
174 773.92 atmosphere 995.0 270 > th dose dependent rect. 23 10
192 774.16 radiation 1.0 10 > th dose dependent rect. 12 20
195 774.43 temperature 25.0 30 > th dose independent rect. 12 13
199 774.84 temperature 10.0 270 > th dose dependent rect. 9 6
202 774.93 humidity 90.0 10 < th dose dependent rect. 12 4
204 775.07 radiation 10.0 10 < th dose dependent rect. 6 21
254 776.65 radiation 10.0 10 > th dose independent rect. 12 4
303 778.25 radiation 10.0 90 > th dose independent sin 20 NA
315 778.64 radiation 1.0 90 < th dose independent rect. 6 14
317 778.71 humidity 80.0 720 > th dose independent rect. 11 3
319 778.82 radiation 20.0 10 < th dose independent rect. 23 23
332 779.40 humidity 80.0 10 < th dose independent rect. 10 6
392 780.52 temperature 25.0 10 > th dose independent rect. 12 4
400 780.71 temperature 25.0 30 > th dose independent rect. 12 11
467 781.77 radiation 1.0 10 < th dose independent rect. 7 15
498 782.14 atmosphere 1005.0 10 > th dose dependent rect. 4 6
503 782.27 humidity 80.0 720 > th dose dependent rect. 11 3
506 782.29 radiation 30.0 270 < th dose independent rect. 13 21
517 782.53 humidity 50.0 10 > th dose dependent rect. 6 14
527 782.81 temperature 25.0 10 > th dose dependent rect. 10 6
531 782.95 wind 1.0 270 > th dose independent rect. 15 18
550 783.13 temperature 20.0 10 > th dose dependent rect. 10 8
579 783.71 radiation 1.0 10 < th dose independent rect. 7 13
593 784.08 temperature 20.0 90 > th dose dependent rect. 9 8
611 784.45 radiation 1.0 90 < th dose independent rect. 10 10
620 784.65 humidity 50.0 10 > th dose dependent rect. 6 16
644 784.86 radiation 20.0 10 < th dose independent rect. 6 21
660 785.19 radiation 1.0 90 < th dose independent sin 22 NA
666 785.26 radiation 1.0 270 > th dose dependent rect. 9 6
670 785.30 radiation 1.0 10 < th dose independent sin 22 NA
683 785.53 humidity 90.0 270 < th dose dependent rect. 10 4
686 785.54 radiation 30.0 270 < th dose independent rect. 15 18
705 785.89 radiation 30.0 10 < th dose dependent rect. 6 23
715 786.03 precipitation 0.1 270 < th dose independent rect. 19 10
717 786.03 precipitation 0.1 270 < th dose dependent rect. 19 10
782 787.02 humidity 80.0 720 < th dose independent rect. 11 11
786 787.06 radiation 20.0 10 < th dose independent rect. 6 23
871 788.07 humidity 90.0 270 < th dose dependent rect. 20 19
890 788.37 temperature 30.0 10 < th dose independent rect. 6 16
892 788.40 radiation 1.0 10 < th dose independent rect. 11 11
916 788.72 radiation 10.0 10 > th dose independent rect. 10 22
919 788.79 temperature 20.0 270 > th dose dependent rect. 11 2
925 788.88 temperature 30.0 10 < th dose independent rect. 6 14
960 789.26 atmosphere 995.0 43200 < th dose dependent rect. 14 10