BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0909400 Os01g0909400|AK068178
(325 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0909400 Protein of unknown function DUF868, plant fami... 538 e-153
Os05g0108400 Protein of unknown function DUF868, plant fami... 216 2e-56
Os02g0198800 Protein of unknown function DUF868, plant fami... 178 6e-45
Os03g0806700 Protein of unknown function DUF868, plant fami... 173 2e-43
Os07g0572300 Protein of unknown function DUF868, plant fami... 171 8e-43
AK069886 79 5e-15
Os08g0439600 Protein of unknown function DUF868, plant fami... 71 1e-12
>Os01g0909400 Protein of unknown function DUF868, plant family protein
Length = 325
Score = 538 bits (1386), Expect = e-153, Method: Compositional matrix adjust.
Identities = 269/325 (82%), Positives = 269/325 (82%)
Query: 1 MMQDLFSVPSCFSSGEKLPDIPSSGTXXXXXXXRQSAVTLVYRAEISGHRRLVTVTWCRN 60
MMQDLFSVPSCFSSGEKLPDIPSSGT RQSAVTLVYRAEISGHRRLVTVTWCRN
Sbjct: 1 MMQDLFSVPSCFSSGEKLPDIPSSGTAAAAAAARQSAVTLVYRAEISGHRRLVTVTWCRN 60
Query: 61 LLTHGLSVSIEGSAGNGKDKIGREYXXXXXXXXXXXXXXXXXXXKSCSACKVEMQPWHFW 120
LLTHGLSVSIEGSAGNGKDKIGREY KSCSACKVEMQPWHFW
Sbjct: 61 LLTHGLSVSIEGSAGNGKDKIGREYGEAAVAATAADGGGGGGGGKSCSACKVEMQPWHFW 120
Query: 121 RKYGAKQFQVDGNAIDVVWDLRSARFSDEPEPLSDYYXXXXXXXXXXXXXXNLKKDAFRR 180
RKYGAKQFQVDGNAIDVVWDLRSARFSDEPEPLSDYY NLKKDAFRR
Sbjct: 121 RKYGAKQFQVDGNAIDVVWDLRSARFSDEPEPLSDYYVAVVAGEEVVLLLGNLKKDAFRR 180
Query: 181 TGSRPSLQDAVLVCKKEHVFSKKRFVTKARFSDRGKLHDISIECSSSNLTGGTDVDMAIK 240
TGSRPSLQDAVLVCKKEHVFSKKRFVTKARFSDRGKLHDISIECSSSNLTGGTDVDMAIK
Sbjct: 181 TGSRPSLQDAVLVCKKEHVFSKKRFVTKARFSDRGKLHDISIECSSSNLTGGTDVDMAIK 240
Query: 241 IDGCVSVLVRHLQWKFRGNECISINKLKVQVYWDAHDWLFGTGMRHALFIFKXXXXXXXX 300
IDGCVSVLVRHLQWKFRGNECISINKLKVQVYWDAHDWLFGTGMRHALFIFK
Sbjct: 241 IDGCVSVLVRHLQWKFRGNECISINKLKVQVYWDAHDWLFGTGMRHALFIFKPEPPSPSP 300
Query: 301 XXXXXXXXTDEYSDFCLFLYAWKVE 325
TDEYSDFCLFLYAWKVE
Sbjct: 301 PGASSEFSTDEYSDFCLFLYAWKVE 325
>Os05g0108400 Protein of unknown function DUF868, plant family protein
Length = 306
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 178/328 (54%), Gaps = 49/328 (14%)
Query: 9 PSCFSSGEKLPDIPSSGTXXXXXXXRQSAVTLVYRAEISGHRRLVTVTWCRNLLTHGLSV 68
PSC + + +IP +G ++ VYRA+I+GH R++TV+W R++L+H +V
Sbjct: 17 PSCDIAAD---EIPVNGHKPG-----RAVTASVYRAKIAGHSRVLTVSWSRDMLSHSFAV 68
Query: 69 SIEGSAGNGKDKIGREYXXXXXXXXXXXXXXXXXXXKSCSACKVEMQPWHFWRKYGAKQF 128
S+ G G + + C+V+++PW FWR+ G+++
Sbjct: 69 SVTGVDG------------------------------ASAECRVDLRPWQFWRRAGSRRV 98
Query: 129 QVDGNA---IDVVWDLRSARF-SDEPEPLSDYYXXXXXXXXXXXXXXNLKKDAFRRTGSR 184
++ G A + V+WDLR ARF + PEP S YY +++KDA RR R
Sbjct: 99 ELAGTAPATVRVMWDLRRARFGAGLPEPRSGYYVAVEAAGEVVLVVGDMRKDALRRASPR 158
Query: 185 PSLQ--DAVLVCKKEHVFSKKRFVTKARFSDRGKLHDISIECSSSNLTGGTDVDMAIKID 242
+ DAV V ++EHVF K+RF KARF D+G +HDI+IEC G D++M I ID
Sbjct: 159 AAPAACDAVPVARREHVFGKRRFAAKARFHDQGTVHDIAIECGGGGEGGDADMEMTIAID 218
Query: 243 GCVSVLVRHLQWKFRGNECISINKLKVQVYWDAHDWLFGTGMRHALFIFKXXXXXXXXXX 302
G +V V+HLQWKFRGN+ ++ ++ KV++YWD HDWLF GMR ALFIF+
Sbjct: 219 GEEAVQVKHLQWKFRGNQSVTFSRAKVEIYWDVHDWLFSAGMRPALFIFRPIVLSSASAP 278
Query: 303 XXX-----XXXTDEYSDFCLFLYAWKVE 325
+ FCL+LYAWK++
Sbjct: 279 AAAMLLDGSPPPPPATGFCLYLYAWKLD 306
>Os02g0198800 Protein of unknown function DUF868, plant family protein
Length = 328
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 139/254 (54%), Gaps = 27/254 (10%)
Query: 41 VYRAEISGHRRLVTVTWCRNLLTHGLSVSIEGSAGNGKDKIGREYXXXXXXXXXXXXXXX 100
VYRA+I+G R VT W R L+ ++SI+G G G
Sbjct: 62 VYRAKINGAPRHVTAVWHRTLINQSFTISIDGGGGGGAGAGDDGAL-------------- 107
Query: 101 XXXXKSCSACKVEMQPWHFWRKYGAKQFQVDGNAIDVVWDLRSARF-SDEPEPLSDYYXX 159
+ KVE++PW FW K GAK VDG+ +D+VWDLRSA+F + PEP + YY
Sbjct: 108 --------SHKVELKPWPFWSKRGAKTLDVDGDRLDIVWDLRSAKFPASSPEPAAGYYVA 159
Query: 160 XXXXXXXXXXXXNLKKDAFRRTGSRPSLQDAVLVCKKEHVFSKKRFVTKARFSDRGKLHD 219
+ KKDAF+RT SRPSL DAVLV ++E V ++ F +A + K H+
Sbjct: 160 LVSRDEVVLLLGDGKKDAFKRTRSRPSLDDAVLVSRRESVSGRRTFAARAPLAAGRKDHE 219
Query: 220 ISIECSSSNLTGGTDVDMAIKIDGCVSVLVRHLQWKFRGNECISINKLKVQVYWDAHDWL 279
I ++ S + G + +M I +DG V V VR LQWKFRGNE + +++ VQV WD HDW+
Sbjct: 220 IVVD---SAIAGPREPEMRITVDGVVLVHVRSLQWKFRGNETVIVDQSPVQVLWDVHDWI 276
Query: 280 FGTG-MRHALFIFK 292
F G A+F+FK
Sbjct: 277 FAGGPAAQAVFVFK 290
>Os03g0806700 Protein of unknown function DUF868, plant family protein
Length = 291
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 156/321 (48%), Gaps = 38/321 (11%)
Query: 9 PSCFSSGEKLPDIPSSGTXXXXXXXRQSAVTLVYRAEISGHRRLVTVTWCRNLLTHGLSV 68
PSCF SS + Q+ VT +Y+A+ SG +++VTW ++L+ GLS+
Sbjct: 5 PSCFGESGVQIADASSSSSSAGKGAAQNLVTCLYQAQFSGRPCVISVTWSKSLMGQGLSI 64
Query: 69 SIEGSAGNGKDKIGREYXXXXXXXXXXXXXXXXXXXKSCSACKVEMQPWHFWRKYGAKQF 128
++ + CK +++PW F +K G+K+
Sbjct: 65 GVDDLSNQ-------------------------------CLCKADIKPWLFSKKKGSKRL 93
Query: 129 QVDGNAIDVVWDLRSARFSDEPEPLSDYYXXXXXXXXXXXXXXNLKKDAFRRTGSRPSLQ 188
V+ I++ WDL A+F PEP+ +Y ++KKDA+R+TG+ +
Sbjct: 94 DVEDGKIEIFWDLSGAKFGAGPEPMEGFYVAVVFDLELILLLGDMKKDAYRKTGANRPML 153
Query: 189 DAVLVCKKEHVFSKKRFVTKARFSDRGKLHDISIECSSSNLTGGTDVDMAIKIDGCVSVL 248
+A V ++EH++ KK + KA+F + G+ HD+ IEC + +L D + I++D +
Sbjct: 154 NAAFVARREHIYGKKIYTAKAQFCENGQFHDVVIECDTVSL---KDPCLEIRVDKKPVMQ 210
Query: 249 VRHLQWKFRGNECISINKLKVQVYWDAHDWLFGTGMRHALFIFKXXXXXXXXXXXXXXXX 308
V+ L WKFRGN+ I ++ L V+V+WD H WLFG +A+F+F+
Sbjct: 211 VKRLAWKFRGNQTILVDGLPVEVFWDVHSWLFGLTTSNAVFMFQTCQAPEKSMPWSYSQV 270
Query: 309 TDEYS----DFCLFLYAWKVE 325
E F L LYAWK+E
Sbjct: 271 FRESQLQGLGFSLILYAWKLE 291
>Os07g0572300 Protein of unknown function DUF868, plant family protein
Length = 284
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 143/295 (48%), Gaps = 38/295 (12%)
Query: 35 QSAVTLVYRAEISGHRRLVTVTWCRNLLTHGLSVSIEGSAGNGKDKIGREYXXXXXXXXX 94
Q+ V Y A + G VTVTW + + LSV+++ S+
Sbjct: 24 QNMVQCTYLARLRGKSCSVTVTWSKMTMGQALSVAVDDSSNR------------------ 65
Query: 95 XXXXXXXXXXKSCSACKVEMQPWHFWRKYGAKQFQVDGNAIDVVWDLRSARFSDEPEPLS 154
CK E++PW F ++ G+K +VDG A+D+VWDL SA+F+ PEP+
Sbjct: 66 -------------CLCKAEIKPWLFSKRKGSKAMEVDGGALDIVWDLSSAKFAAGPEPVE 112
Query: 155 DYYXXXXXXXXXXXXXXNLKKDAFRRTGSRPSLQDAVLVCKKEHVFSKKRFVTKARFSDR 214
+Y +++KD R S +AV++ +KEHV+ KK + KARF D
Sbjct: 113 GFYVALVCDLEAVLVLGDMRKDGDHRVSSDVLASNAVMIARKEHVYGKKVYSAKARFLDI 172
Query: 215 GKLHDISIECSSSNLTGGTDVDMAIKIDGCVSVLVRHLQWKFRGNECISINKLKVQVYWD 274
G+LH I+IEC +S L D + I+I + V+ L WKFRGN+ + ++ L V+V WD
Sbjct: 173 GQLHHITIECDTSGL---KDPSLEIRIGKKRVMQVKRLAWKFRGNQTVYVDGLPVEVLWD 229
Query: 275 AHDWLFGTGMRHALFIFKXXXXXXXXXXXXXXXXTDEYS----DFCLFLYAWKVE 325
HDWLFG+ + A+F+F+ E F L L AWK E
Sbjct: 230 VHDWLFGSSNKCAVFLFQSGQSMEKLLSRSCSQNEKELQAHRFGFTLILNAWKTE 284
>AK069886
Length = 349
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 97/252 (38%), Gaps = 47/252 (18%)
Query: 38 VTLVYRAEIS--GHRRLVTVTWCRNLLTHGLSVSIEGSAGNGKDKIGREYXXXXXXXXXX 95
VT VYR+ +S G ++ VTW R LSV++ +A +
Sbjct: 53 VTSVYRSRLSASGKDLVIDVTWSRAPDGPALSVAVHDAAAASR----------------- 95
Query: 96 XXXXXXXXXKSCSACKVEMQPWHFWRKYGAKQFQVDGNAIDVVWDLRSARFSDEPEPLSD 155
+ P H R+ G+ F + V WD +AR++ PEP+S
Sbjct: 96 --------LRGGGGGAAGAAPRHLHRRKGSGTFTAGSCVVGVFWDFAAARYAAGPEPVSG 147
Query: 156 YYXXXXXXXXXXXXXXNLKKDAFRRTGSRPSLQDAVLVCKKEHVFSKKRFV------TKA 209
YY ++ + R L + + ++RFV T+A
Sbjct: 148 YYVAVVADAEFVLLLGDMSRGYVER------LHGGIPIAGSRMARRRERFVGCGCWSTRA 201
Query: 210 RFSDRGKLHDISIECSSSNLTGGTDVDMAIKIDGCVSVLVRHLQWKFRGNECISIN-KLK 268
RF + G HDI + D + + +DG V +R L+W FRG+ + ++
Sbjct: 202 RFLESGAEHDIVVALDG-------DAEAWVTVDGRKVVQLRRLRWNFRGSHTLFLDGGAP 254
Query: 269 VQVYWDAHDWLF 280
V + WD H WLF
Sbjct: 255 VDMTWDLHGWLF 266
>Os08g0439600 Protein of unknown function DUF868, plant family protein
Length = 406
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 32/194 (16%)
Query: 114 MQPWHFWRKYGAKQFQVDGNA-IDVVWDLRSARF--SDEPEPLSDYYXXXXXXXXXXXXX 170
++PW WR+ G ++F+ G+ +D+ WDL ARF S PEP S ++
Sbjct: 87 VRPWLLWRRRGTRRFRAAGDRRVDLAWDLTRARFPGSGSPEPSSGFFVAVVVDGEMVLAA 146
Query: 171 XNLK------KDAFRRTGSRPSLQDAVLVCKKEHVFSK---------KRFVT---KAR-- 210
+L A R G RP VL+ ++EHV + + +VT K R
Sbjct: 147 GDLSDAAYRRTRARRPAGPRP-----VLLSRREHVAMRDAGRGGRGHRSWVTVRGKEREI 201
Query: 211 ---FSDRGKLHDISIECSSSNLTGGTDVDMAIKIDGCVSVLVRHLQWKFRGNECISINKL 267
RG+ D SSS DV +++ IDG + VR L+WKFRG+E + +
Sbjct: 202 SVDLVSRGRGRDTGSSGSSSREKDRADVGLSVSIDGERVLHVRRLRWKFRGSERVDLGGG 261
Query: 268 -KVQVYWDAHDWLF 280
+VQ+ WD H+WLF
Sbjct: 262 DRVQLSWDLHNWLF 275
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,817,259
Number of extensions: 343051
Number of successful extensions: 605
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 8
Length of query: 325
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 224
Effective length of database: 11,762,187
Effective search space: 2634729888
Effective search space used: 2634729888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)