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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0198800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF868, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.53 (0.045) R2 : 0.454
β1 : 1.2 (0.164) R2dD : 0.0701 R2D : 0.0277
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.94 (0.192) R2dE : 0.385 R2E : -0.0173
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 13.2 (0.837) R2dD*E : 0.389 R2D*E : 0.0328
γ1 : -0.0717 (0.0976) R2dN8 : 0.000876 R2N8 : -0.00289
σ : 0.82
deviance : 310.22
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 5.434
memory length : 3975
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.4
open length of G : 4.37

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
306.88 0.823 3.52 1.19 0.249 2.87 -0.0574 12.8 -0.0715 8.94 5.399 3976 18.5 4.28
405.2 0.938 3.38 1.21 0.357 2.51 0.264 -- 0.106 7.53 5.4 3947 19 1.99
306.74 0.816 3.52 1.2 0.252 2.91 -- 13 -0.066 9.08 5.406 3964 18.5 4.32
401.46 0.933 3.39 1.07 0.298 2.53 -- -- 0.131 9.86 5.4 3944 19 1.98
310.22 0.82 3.53 1.2 -- 2.94 -- 13.2 -0.0717 -- 5.434 3975 18.4 4.37
534.27 1.08 3.45 0.866 0.32 -- 0.106 -- -0.22 9.33 -- -- -- --
534.31 1.08 3.45 0.87 0.321 -- -- -- -0.22 9.24 -- -- -- --
401.27 0.933 3.35 0.972 -- 2.34 -- -- 0.151 -- 5.632 3915 19 1.92
346.71 0.867 3.34 -- 0.273 3.24 -- -- -0.0288 8.69 7.899 4528 18.9 1.72
540.29 1.09 3.46 0.869 -- -- -- -- -0.218 -- -- -- -- --
554.25 1.1 3.47 -- 0.321 -- -- -- -0.317 9.03 -- -- -- --
331.38 0.848 3.43 -- -- 4.93 -- -- -0.0891 -- 9.809 4351 18.6 2.33
560.19 1.1 3.48 -- -- -- -- -- -0.315 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 316.53 wind 5 4320 > th dose dependent rect. 19 4
6 319.57 wind 7 4320 < th dose independent rect. 18 4
8 320.08 wind 7 4320 < th dose independent rect. 18 7
23 323.87 wind 7 4320 > th dose independent rect. 18 4
147 341.28 humidity 90 1440 < th dose dependent rect. 3 1
163 347.99 atmosphere 995 14400 < th dose independent rect. 18 1
166 347.99 atmosphere 995 14400 < th dose dependent rect. 18 1
188 348.78 atmosphere 995 14400 > th dose independent rect. 17 1
189 349.00 atmosphere 995 14400 > th dose independent rect. 16 3
191 349.04 atmosphere 995 14400 > th dose independent rect. 16 5
246 353.93 atmosphere 995 14400 > th dose independent rect. 11 10
247 353.94 atmosphere 995 14400 > th dose independent rect. 11 8
251 354.03 atmosphere 995 14400 > th dose independent rect. 7 12
252 354.03 atmosphere 995 14400 > th dose independent rect. 7 14
303 356.50 humidity 90 1440 < th dose dependent rect. 24 7
387 359.27 humidity 90 1440 < th dose dependent rect. 2 5
423 361.32 atmosphere 995 14400 > th dose independent rect. 20 20
430 361.60 humidity 80 1440 < th dose independent rect. 22 1
497 363.02 atmosphere 995 14400 > th dose independent sin 22 NA
505 363.32 atmosphere 995 14400 < th dose independent sin 22 NA
514 363.50 humidity 90 1440 < th dose dependent rect. 24 4
515 363.54 atmosphere 995 14400 > th dose independent sin 3 NA
549 363.98 radiation 1 14400 < th dose dependent rect. 22 4
556 364.29 radiation 1 14400 < th dose dependent rect. 19 7
563 364.53 atmosphere 995 14400 < th dose independent sin 3 NA
568 364.57 atmosphere 995 14400 < th dose dependent sin 23 NA
639 365.89 radiation 1 14400 < th dose dependent rect. 19 9
802 366.99 atmosphere 995 14400 > th dose independent no NA NA
803 366.99 atmosphere 995 14400 > th dose independent rect. 14 23
807 367.00 atmosphere 995 14400 > th dose independent rect. 12 23
817 367.01 atmosphere 995 14400 > th dose independent rect. 10 23
895 367.64 atmosphere 995 14400 > th dose independent rect. 14 21
908 367.74 atmosphere 1005 14400 < th dose independent rect. 6 1
970 368.12 atmosphere 995 14400 < th dose independent no NA NA