BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0523600 Os07g0523600|AK059906
(275 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0523600 Similar to Glucose-6-phosphate/phosphate-trans... 483 e-137
Os07g0523965 478 e-135
Os08g0187800 Similar to Glucose-6-phosphate/phosphate-trans... 440 e-124
Os01g0239200 Similar to Phophate translocator (Fragment) 192 2e-49
Os08g0344600 Similar to Triose phosphate/phosphate transloc... 191 5e-49
Os09g0297400 Similar to Phosphate/phosphoenolpyruvate trans... 189 2e-48
Os05g0241200 Similar to Phophate translocator (Fragment) 184 7e-47
Os01g0172100 Similar to Triose phosphate/phosphate transloc... 184 7e-47
AY028422 183 1e-46
Os04g0692000 Protein of unknown function DUF6, transmembran... 81 8e-16
Os08g0104900 Protein of unknown function DUF6, transmembran... 78 6e-15
>Os07g0523600 Similar to Glucose-6-phosphate/phosphate-translocator precursor
Length = 275
Score = 483 bits (1244), Expect = e-137, Method: Compositional matrix adjust.
Identities = 252/275 (91%), Positives = 252/275 (91%)
Query: 1 YNKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGH 60
YNKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGH
Sbjct: 1 YNKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGH 60
Query: 61 VAATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITE 120
VAATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITE
Sbjct: 61 VAATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITE 120
Query: 121 LNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMLSLVILLPFAFAMEG 180
LNFNMIGFMGAMISNLAFVFRNIF NYYACLSMLSLVILLPFAFAMEG
Sbjct: 121 LNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMLSLVILLPFAFAMEG 180
Query: 181 PKVWAAGWQKAVAEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISV 240
PKVWAAGWQKAVAEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISV
Sbjct: 181 PKVWAAGWQKAVAEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISV 240
Query: 241 IVASIIIFHTPVQPINXXXXXXXXXXTFIYSQAKQ 275
IVASIIIFHTPVQPIN TFIYSQAKQ
Sbjct: 241 IVASIIIFHTPVQPINALGAAIAILGTFIYSQAKQ 275
>Os07g0523965
Length = 390
Score = 478 bits (1229), Expect = e-135, Method: Compositional matrix adjust.
Identities = 249/272 (91%), Positives = 249/272 (91%)
Query: 1 YNKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGH 60
YNKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGH
Sbjct: 118 YNKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGH 177
Query: 61 VAATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITE 120
VAATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITE
Sbjct: 178 VAATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITE 237
Query: 121 LNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMLSLVILLPFAFAMEG 180
LNFNMIGFMGAMISNLAFVFRNIF NYYACLSMLSLVILLPFAFAMEG
Sbjct: 238 LNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMLSLVILLPFAFAMEG 297
Query: 181 PKVWAAGWQKAVAEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISV 240
PKVWAAGWQKAVAEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISV
Sbjct: 298 PKVWAAGWQKAVAEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISV 357
Query: 241 IVASIIIFHTPVQPINXXXXXXXXXXTFIYSQ 272
IVASIIIFHTPVQPIN TFIYSQ
Sbjct: 358 IVASIIIFHTPVQPINALGAAIAILGTFIYSQ 389
>Os08g0187800 Similar to Glucose-6-phosphate/phosphate-translocator precursor
Length = 387
Score = 440 bits (1132), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/275 (80%), Positives = 238/275 (86%)
Query: 1 YNKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGH 60
YNKKVLNAFPYPWLTSTLSLA GSA+ML SWATR+ EAP TDLDFWK L PVA+AHTIGH
Sbjct: 113 YNKKVLNAFPYPWLTSTLSLACGSAMMLVSWATRLVEAPKTDLDFWKVLFPVAVAHTIGH 172
Query: 61 VAATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITE 120
VAATVSM+KVAVSFTHIIKS EPAFSVLVSRF LGE FP PVY SLLPIIGGCALAA+TE
Sbjct: 173 VAATVSMSKVAVSFTHIIKSAEPAFSVLVSRFLLGETFPVPVYLSLLPIIGGCALAAVTE 232
Query: 121 LNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMLSLVILLPFAFAMEG 180
LNFNM+GFMGAMISNLAFVFRNIF NYYACLS++SLVIL PFA AMEG
Sbjct: 233 LNFNMVGFMGAMISNLAFVFRNIFSKRGMKGKSVSGMNYYACLSIMSLVILTPFAIAMEG 292
Query: 181 PKVWAAGWQKAVAEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISV 240
P++WAAGWQKA+AE+GPN VWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISV
Sbjct: 293 PQMWAAGWQKALAEVGPNVVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISV 352
Query: 241 IVASIIIFHTPVQPINXXXXXXXXXXTFIYSQAKQ 275
IV+SIIIFHTPV+P+N TF+YSQAKQ
Sbjct: 353 IVSSIIIFHTPVRPVNALGAAIAILGTFLYSQAKQ 387
>Os01g0239200 Similar to Phophate translocator (Fragment)
Length = 417
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 155/248 (62%), Gaps = 3/248 (1%)
Query: 2 NKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGHV 61
NKK+ N FPYP+ S + L G L SW + + + K L PVA+ H +GHV
Sbjct: 134 NKKIYNYFPYPYFVSVIHLLVGVVYCLVSWTVGLPKRAPINSTLLKLLFPVALCHALGHV 193
Query: 62 AATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITEL 121
+ VS A VAVSF H IK+ EP F+ ++F LG+ P P++ SL P++ G ++A++TEL
Sbjct: 194 TSNVSFATVAVSFAHTIKALEPFFNAAATQFVLGQQVPLPLWLSLAPVVLGVSMASLTEL 253
Query: 122 NFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMLSLVILLPFAFAMEGP 181
+FN GF+ AMISN++F +R+I+ N YA +S+++L++ +P A +EGP
Sbjct: 254 SFNWTGFINAMISNISFTYRSIY--SKKAMTDMDSTNVYAYISIIALIVCIPPAVIIEGP 311
Query: 182 KVWAAGWQKAVAEIG-PNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISV 240
++ G+ A+A++G FV + +FYHLYNQV+ +L+ ++PLT ++GN +KR+ V
Sbjct: 312 QLLQHGFNDAIAKVGLTKFVSDLFFVGLFYHLYNQVATNTLERVAPLTHAVGNVLKRVFV 371
Query: 241 IVASIIIF 248
I SII+F
Sbjct: 372 IGFSIIVF 379
>Os08g0344600 Similar to Triose phosphate/phosphate translocator, non-green
plastid, chloroplast precursor (CTPT)
Length = 407
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/277 (40%), Positives = 156/277 (56%), Gaps = 3/277 (1%)
Query: 1 YNKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGH 60
YNK+VL FPYP +T+ A G+ + L W T I P A+ P+A+ HT+G+
Sbjct: 124 YNKQVLKVFPYPINITTVQFAVGTVVALFMWITGILRRPKISGAQLFAILPLAVVHTMGN 183
Query: 61 VAATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITE 120
+ +S+ KVAVSFTH IK+ EP FSVL+S FLGE V SLLPI+GG ALA++TE
Sbjct: 184 LFTNMSLGKVAVSFTHTIKAMEPFFSVLLSAIFLGELPTVWVILSLLPIVGGVALASLTE 243
Query: 121 LNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXX--NYYACLSMLSLVILLPFAFAM 178
+FN GF AM SN+ F RN+ N ++ ++++S +L P AF
Sbjct: 244 ASFNWAGFWSAMASNVTFQSRNVLSKKLMVKKEESLDNINLFSIITVMSFFLLAPVAFLT 303
Query: 179 EGPKVWAAGWQKAVAEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRI 238
EG K+ Q A + + A ++ +H Y QVSYM L +SP+T S+GN +KR+
Sbjct: 304 EGIKITPTVLQSAGLNVKQVLTRSLLA-ALCFHAYQQVSYMILARVSPVTHSVGNCVKRV 362
Query: 239 SVIVASIIIFHTPVQPINXXXXXXXXXXTFIYSQAKQ 275
VIV S++ F TPV PIN F+YSQ K+
Sbjct: 363 VVIVTSVLFFRTPVSPINSLGTAIALAGVFLYSQLKR 399
>Os09g0297400 Similar to Phosphate/phosphoenolpyruvate translocator
Length = 408
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/278 (41%), Positives = 155/278 (55%), Gaps = 5/278 (1%)
Query: 1 YNKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGH 60
YNK+VL FPYP + + A G+ I L W T I + P A+ P+A+ HT+G+
Sbjct: 125 YNKQVLKVFPYPINITNVQFAVGTVIALFMWITGILKRPKISGAQLAAILPLAMVHTMGN 184
Query: 61 VAATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAP-VYFSLLPIIGGCALAAIT 119
+ +S+ KVAVSFTH IK+ EP FSVL+S FLGE P P V SL+PI+GG ALA++T
Sbjct: 185 LFTNMSLGKVAVSFTHTIKAMEPFFSVLLSALFLGE-MPTPFVVLSLVPIVGGVALASLT 243
Query: 120 ELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXN--YYACLSMLSLVILLPFAFA 177
E +FN GF AM SN+ F RN+ N ++ ++++S +L P
Sbjct: 244 EASFNWAGFWSAMASNVTFQSRNVLSKKLMVKKEESLDNITLFSIITVMSFFLLAPVTLL 303
Query: 178 MEGPKVWAAGWQKAVAEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKR 237
EG KV Q A + + + A F H Y QVSYM L +SP+T S+GN +KR
Sbjct: 304 TEGVKVTPTVLQSAGLNLKQIYTRSLIAAFCF-HAYQQVSYMILARVSPVTHSVGNCVKR 362
Query: 238 ISVIVASIIIFHTPVQPINXXXXXXXXXXTFIYSQAKQ 275
+ VIV S++ F TPV PIN F+YSQ K+
Sbjct: 363 VVVIVTSVLFFRTPVSPINSLGTGVALAGVFLYSQLKR 400
>Os05g0241200 Similar to Phophate translocator (Fragment)
Length = 404
Score = 184 bits (467), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 153/252 (60%), Gaps = 3/252 (1%)
Query: 2 NKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGHV 61
NKK+ + FPYP+ S L G L W+ + + + K L PVA+ H IGHV
Sbjct: 120 NKKIFDYFPYPYFVSVSHLLVGVLYCLVGWSFGLPKRAPINSTVLKLLFPVAVCHAIGHV 179
Query: 62 AATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITEL 121
+TVS A VAVSF H IK+ EP F+ S+F LG+ P ++ SL P++ G ++A++TEL
Sbjct: 180 TSTVSFAAVAVSFAHTIKALEPFFNAAASQFILGQQVPLTLWLSLAPVVIGVSMASLTEL 239
Query: 122 NFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMLSLVILLPFAFAMEGP 181
+FN GF+ AMISN++F R+++ N YA +S+++L++ +P A +EGP
Sbjct: 240 SFNWTGFVNAMISNISFTLRSVY--SKKAMTDMDSTNLYAYISIIALLVCIPPAIIIEGP 297
Query: 182 KVWAAGWQKAVAEIG-PNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISV 240
++ G++ A+A++G V + +FYHLYNQV+ +L+ ++PLT ++GN +KR+ V
Sbjct: 298 QLVQHGFKDAIAKVGLAKLVSNLLVVGLFYHLYNQVATNTLERVTPLTHAVGNVLKRVFV 357
Query: 241 IVASIIIFHTPV 252
I SII F +
Sbjct: 358 IGFSIIAFGNKI 369
>Os01g0172100 Similar to Triose phosphate/phosphate translocator, non-green
plastid, chloroplast precursor (CTPT)
Length = 393
Score = 184 bits (466), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 157/277 (56%), Gaps = 3/277 (1%)
Query: 1 YNKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGH 60
YNK+VL P+P+ + LA GS ++ WA ++ AP + ++P+A H +G
Sbjct: 112 YNKQVLQPLPFPYTITAFQLAFGSFVIFLMWALKLHPAPRISISQLAKIAPLAAGHMLGT 171
Query: 61 VAATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITE 120
V +S++KVAVSFTH IK+ EP F+VL+S FFLGE V SL+PI+GG ALA++TE
Sbjct: 172 VFTNMSLSKVAVSFTHTIKASEPFFTVLLSAFFLGETPSLLVLGSLVPIVGGVALASLTE 231
Query: 121 LNFNMIGFMGAMISNLAFVFRNIFXXXXX--XXXXXXXXNYYACLSMLSLVILLPFAFAM 178
L+FN IGF AM SNL + RN+ N ++ L++LS ++ LP
Sbjct: 232 LSFNWIGFWSAMASNLLYQSRNVLSKKLLGGEEEALDDINLFSILTILSFLLSLPLMLFS 291
Query: 179 EGPKVWAAGWQKAVAEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRI 238
EG K ++ G+ ++ A +H Y ++SY+ L +SP+T S+ N +KR+
Sbjct: 292 EGVK-FSPGYLRSTGLNLQELCVRAALAGFCFHGYQKLSYLILARVSPVTHSVANCVKRV 350
Query: 239 SVIVASIIIFHTPVQPINXXXXXXXXXXTFIYSQAKQ 275
VIVAS++ F TP+ P+N F+YS+ K+
Sbjct: 351 VVIVASVLFFRTPISPVNALGTGVALGGVFLYSRLKR 387
>AY028422
Length = 417
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 153/252 (60%), Gaps = 3/252 (1%)
Query: 2 NKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGHV 61
NKK+ N FPYP+ S + L G L SWA + + + K L PVA+ H +GH
Sbjct: 134 NKKIYNYFPYPYFVSVIHLLVGVVYCLLSWAVGLPKRAPINATLLKLLFPVALCHALGHA 193
Query: 62 AATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITEL 121
+ VS A VAVSF H IK+ EP F+ ++F LG+ P ++ SL P++ G ++A++TEL
Sbjct: 194 TSNVSFATVAVSFAHTIKALEPLFNAAATQFVLGQTVPLSLWLSLAPVVLGVSMASLTEL 253
Query: 122 NFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMLSLVILLPFAFAMEGP 181
+F+ GF+ AMI N++F +R+I+ N YA +S+++LV+ +P A +EGP
Sbjct: 254 SFSWKGFINAMIPNISFTYRSIY--SKKAMTDMDSTNVYAYISIIALVVCIPPALIIEGP 311
Query: 182 KVWAAGWQKAVAEIG-PNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISV 240
++ G A+A++G FV + +FYHLYNQ++ +L+ ++PLT ++GN +KR+ V
Sbjct: 312 QLVQYGLNDAIAKVGMTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRVFV 371
Query: 241 IVASIIIFHTPV 252
I SIIIF +
Sbjct: 372 IGFSIIIFGNKI 383
>Os04g0692000 Protein of unknown function DUF6, transmembrane domain containing
protein
Length = 350
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 3/213 (1%)
Query: 44 DFWKALSPVAIAHTIGHVAATVSMAKVAVSFTHIIKSGEPAFSVLVSRFFLGEHFPAPVY 103
D W+ + P++ I V VS+ + VSF IKS PA +V++ +HF ++
Sbjct: 82 DRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLVWSKHFEWRIW 141
Query: 104 FSLLPIIGGCALAAITELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACL 163
SL+PI+GG L +ITEL+FNM GF AM+ LA + I N +
Sbjct: 142 ASLVPIVGGILLTSITELSFNMFGFCAAMVGCLATSTKTILAESLLHGYKFDSINTVYYM 201
Query: 164 SMLSLVILLPFAFAMEGPKVWAAGWQKAVAEIGPNFVWWVAAQSVFYHLYNQVSYMSLDE 223
+ + +IL A +EG V W I V + + + + L + Y+ +
Sbjct: 202 APFATMILALPAVLLEGGGV--VTWFYTHDSIASALVIIIGSGVLAFCLNFSIFYV-IHS 258
Query: 224 ISPLTFSIGNTMKRISVIVASIIIFHTPVQPIN 256
+ +TF++ +K ++ S +IF P+ P+N
Sbjct: 259 TTAVTFNVAGNLKVAVAVLVSWLIFRNPISPMN 291
>Os08g0104900 Protein of unknown function DUF6, transmembrane domain containing
protein
Length = 337
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 105/238 (44%), Gaps = 6/238 (2%)
Query: 19 SLAAGSAIMLASWATRIAEAPATDLDFWKALSPVAIAHTIGHVAATVSMAKVAVSFTHII 78
S+ A AI + I AP D W+ + P++ I V VS+ + VSF I
Sbjct: 56 SIGAYIAIKILKMKPLIEVAPE---DRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTI 112
Query: 79 KSGEPAFSVLVSRFFLGEHFPAPVYFSLLPIIGGCALAAITELNFNMIGFMGAMISNLAF 138
KS PA +V++ ++F ++ SL+PI+GG L +ITEL+FNM GF AM+ LA
Sbjct: 113 KSFTPATTVILQWLVWRKYFEWRIWASLVPIVGGIMLTSITELSFNMFGFCAAMVGCLAT 172
Query: 139 VFRNIFXXXXXXXXXXXXXNYYACLSMLSLVILLPFAFAMEGPKVWAAGWQKAVAEIGPN 198
+ I N ++ + +IL A +EG V W I P
Sbjct: 173 STKTILAESLLHGYKFDSINTVYYMAPFATMILSVPAIVLEGSGV--INWLYTYDSIVPA 230
Query: 199 FVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVASIIIFHTPVQPIN 256
+ + V N + + + +TF++ +K ++ S +IF P+ +N
Sbjct: 231 LI-IITTSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWMIFRNPISAMN 287
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,618,981
Number of extensions: 265430
Number of successful extensions: 902
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 890
Number of HSP's successfully gapped: 12
Length of query: 275
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,866,615
Effective search space: 2088524240
Effective search space used: 2088524240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)