Os01g0172100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT).
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Os01g0172100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.82 | 0.293 | 12.3 | -0.397 | 0.891 | -0.55 | 0.12 | -0.0295 | -0.225 | 5.46 | 71.81 | 1267 | -- | -- |
| 38.81 | 0.29 | 12.3 | -0.401 | 0.891 | -0.552 | 0.13 | -- | -0.225 | 5.49 | 72 | 1257 | -- | -- |
| 38.85 | 0.29 | 12.3 | -0.395 | 0.891 | -0.549 | -- | -0.0349 | -0.225 | 5.46 | 71.81 | 1263 | -- | -- |
| 38.85 | 0.29 | 12.3 | -0.401 | 0.891 | -0.552 | -- | -- | -0.227 | 5.46 | 71.84 | 1263 | -- | -- |
| 79.55 | 0.415 | 12.3 | -0.37 | -- | -0.684 | -- | -0.118 | -0.211 | -- | 73.72 | 1282 | -- | -- |
| 49.64 | 0.33 | 12.3 | -0.289 | 0.947 | -- | 0.109 | -- | -0.144 | 5.07 | -- | -- | -- | -- |
| 49.67 | 0.33 | 12.3 | -0.289 | 0.947 | -- | -- | -- | -0.145 | 5.06 | -- | -- | -- | -- |
| 79.58 | 0.415 | 12.3 | -0.386 | -- | -0.689 | -- | -- | -0.216 | -- | 73.59 | 1280 | -- | -- |
| 42.92 | 0.305 | 12.3 | -- | 0.891 | -0.49 | -- | -- | -0.175 | 5.27 | 72.78 | 1312 | -- | -- |
| 96.77 | 0.46 | 12.3 | -0.255 | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
| 51.87 | 0.337 | 12.3 | -- | 0.942 | -- | -- | -- | -0.112 | 5.07 | -- | -- | -- | -- |
| 83.47 | 0.426 | 12.3 | -- | -- | -0.642 | -- | -- | -0.193 | -- | 74 | 1280 | -- | -- |
| 98.48 | 0.463 | 12.3 | -- | -- | -- | -- | -- | -0.0921 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.92 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 3 | 39.04 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 4 | 39.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 6 | 39.07 | humidity | 70 | 1440 | > th | dose independent | sin | 11 | NA |
| 8 | 39.11 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 17 | 39.22 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 18 |
| 32 | 39.36 | humidity | 70 | 1440 | < th | dose independent | sin | 11 | NA |
| 62 | 39.57 | humidity | 50 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 68 | 39.60 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 21 |
| 80 | 39.62 | humidity | 50 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 86 | 39.63 | humidity | 50 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 102 | 39.66 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 109 | 39.68 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 114 | 39.68 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 20 |
| 122 | 39.69 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 125 | 39.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 128 | 39.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 17 |
| 134 | 39.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 20 |
| 146 | 39.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 147 | 39.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 150 | 39.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 162 | 39.70 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 209 | 39.70 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 217 | 39.71 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 250 | 39.73 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 260 | 39.75 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 272 | 39.76 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 273 | 39.76 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 275 | 39.76 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 352 | 39.83 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 384 | 39.86 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 386 | 39.86 | humidity | 70 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 454 | 39.86 | humidity | 50 | 1440 | > th | dose dependent | sin | 3 | NA |
| 547 | 39.94 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 21 |
| 605 | 39.99 | humidity | 60 | 1440 | > th | dose dependent | rect. | 3 | 12 |
| 634 | 40.00 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 18 |
| 742 | 40.05 | humidity | 90 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 778 | 40.09 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 804 | 40.10 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 871 | 40.15 | humidity | 80 | 1440 | < th | dose dependent | sin | 11 | NA |