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Os04g0692000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0123) R2 : 0.661
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.795 (0.0298) R2dC : 0.529 R2C : 0.504
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.332 (0.026) R2dN8 : 0.157 R2N8 : 0.132
σ : 0.233
deviance : 24.73
__
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C
peak time of C : 1.64
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.61 0.186 11.1 -0.309 0.712 0.564 0.109 -0.767 0.226 1.75 24.4 2605 -- --
15.82 0.185 11.1 -0.0993 0.718 0.5 0.113 -- 0.274 1.69 24.13 2632 -- --
15.66 0.184 11.1 -0.301 0.711 0.564 -- -0.738 0.229 1.75 24.49 2591 -- --
15.82 0.185 11.1 -0.105 0.714 0.492 -- -- 0.271 1.69 23.9 2625 -- --
41.15 0.299 11.1 -0.45 -- 0.944 -- -1.36 0.134 -- 24.1 1075 -- --
24.51 0.232 11 0.0765 0.794 -- 0.15 -- 0.341 1.65 -- -- -- --
24.6 0.232 11 0.0717 0.794 -- -- -- 0.34 1.64 -- -- -- --
41.9 0.301 11.1 -0.137 -- 0.811 -- -- 0.243 -- 24.07 1080 -- --
16.07 0.187 11.1 -- 0.716 0.469 -- -- 0.286 1.69 24.05 2620 -- --
63.02 0.371 11 0.104 -- -- -- -- 0.357 -- -- -- -- --
24.73 0.233 11 -- 0.795 -- -- -- 0.332 1.64 -- -- -- --
42.36 0.303 11.1 -- -- 0.781 -- -- 0.263 -- 24.1 1078 -- --
63.3 0.371 11 -- -- -- -- -- 0.346 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.85 temperature 20 720 > th dose dependent rect. 16 7
15 15.24 temperature 20 720 > th dose dependent sin 16 NA
20 15.31 temperature 25 720 > th dose dependent rect. 17 15
24 15.35 radiation 40 4320 < th dose dependent rect. 18 9
25 15.36 temperature 25 720 > th dose dependent sin 13 NA
30 15.38 temperature 10 720 > th dose dependent sin 16 NA
34 15.43 temperature 30 720 < th dose dependent rect. 15 9
58 15.52 radiation 30 4320 < th dose dependent rect. 18 7
85 15.60 radiation 10 4320 < th dose dependent rect. 17 4
92 15.61 radiation 10 4320 < th dose dependent rect. 17 2
103 15.61 temperature 20 720 > th dose dependent rect. 13 14
123 15.64 temperature 20 720 > th dose dependent rect. 11 16
124 15.65 humidity 90 43200 < th dose independent rect. 22 20
128 15.65 temperature 20 43200 < th dose dependent rect. 4 12
140 15.66 temperature 20 43200 < th dose dependent rect. 4 10
151 15.67 temperature 10 10 > th dose dependent sin 12 NA
166 15.68 temperature 20 43200 < th dose dependent sin 2 NA
167 15.68 temperature 20 43200 < th dose dependent rect. 5 5
178 15.69 humidity 90 43200 < th dose independent rect. 22 16
200 15.69 humidity 90 43200 > th dose dependent rect. 4 13
208 15.70 humidity 90 43200 < th dose independent rect. 10 21
236 15.71 humidity 90 43200 > th dose independent rect. 22 19
262 15.72 radiation 1 43200 > th dose independent rect. 18 1
270 15.72 temperature 25 720 < th dose independent rect. 15 9
301 15.73 humidity 90 43200 > th dose independent rect. 1 16
306 15.73 humidity 90 43200 < th dose independent rect. 10 18
327 15.73 radiation 30 14400 > th dose dependent rect. 15 17
356 15.74 humidity 90 43200 > th dose dependent sin 2 NA
357 15.74 temperature 20 43200 < th dose dependent rect. 4 1
412 15.75 humidity 90 43200 > th dose dependent rect. 22 20
416 15.75 humidity 90 43200 > th dose dependent rect. 4 21
418 15.75 temperature 20 43200 < th dose dependent rect. 12 22
441 15.76 temperature 20 43200 < th dose dependent no NA NA
461 15.76 temperature 20 43200 < th dose dependent rect. 14 19
478 15.76 temperature 20 43200 < th dose dependent rect. 8 22
501 15.77 humidity 90 43200 < th dose independent sin 5 NA
503 15.77 humidity 90 43200 < th dose independent no NA NA
517 15.77 humidity 90 43200 > th dose independent rect. 10 21
520 15.77 humidity 90 43200 < th dose independent rect. 17 22
527 15.77 humidity 90 43200 < th dose independent rect. 14 23
532 15.77 humidity 90 43200 > th dose dependent rect. 22 2
580 15.78 humidity 90 43200 > th dose independent sin 5 NA
581 15.78 humidity 90 43200 < th dose independent rect. 21 4
603 15.78 humidity 90 43200 < th dose independent rect. 5 23
612 15.78 radiation 1 14400 < th dose dependent rect. 5 1
613 15.78 radiation 1 43200 < th dose dependent rect. 18 1
621 15.78 humidity 90 43200 > th dose dependent rect. 4 7
622 15.78 radiation 1 43200 < th dose dependent rect. 18 7
635 15.78 temperature 20 43200 < th dose dependent rect. 14 16
637 15.78 temperature 20 43200 < th dose dependent rect. 17 16
679 15.79 humidity 90 43200 < th dose independent rect. 22 1
708 15.79 humidity 90 43200 < th dose independent rect. 2 23
713 15.79 humidity 90 43200 > th dose dependent rect. 5 1
717 15.79 humidity 90 43200 > th dose dependent rect. 4 3
745 15.79 humidity 90 43200 > th dose dependent rect. 9 22
776 15.80 humidity 90 43200 > th dose dependent no NA NA
821 15.80 humidity 90 43200 > th dose dependent rect. 13 23
910 15.82 humidity 90 43200 > th dose independent no NA NA
912 15.82 humidity 90 43200 < th dose independent sin 15 NA
913 15.82 humidity 90 43200 > th dose independent rect. 22 2
934 15.82 humidity 90 43200 > th dose independent rect. 1 23
962 15.82 humidity 90 43200 > th dose dependent rect. 10 16
987 15.83 radiation 1 43200 < th dose independent rect. 18 7
998 15.83 humidity 90 43200 > th dose independent rect. 10 17