Os08g0104900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os08g0104900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.9 | 0.401 | 11.8 | 0.73 | 0.384 | -1.24 | 1.05 | 1.02 | 0.259 | 3.08 | 18.9 | 3679 | -- | -- |
| 74.31 | 0.402 | 11.8 | 0.588 | 0.381 | -1.29 | 1.26 | -- | 0.264 | 2.79 | 18.4 | 3806 | -- | -- |
| 76.52 | 0.407 | 11.8 | 0.764 | 0.388 | -1.24 | -- | 1.22 | 0.271 | 3.26 | 18.9 | 3693 | -- | -- |
| 77.45 | 0.41 | 11.8 | 0.46 | 0.392 | -1.29 | -- | -- | 0.194 | 3.26 | 17.66 | 3681 | -- | -- |
| 83.85 | 0.426 | 11.8 | 0.815 | -- | -1.13 | -- | 1.38 | 0.27 | -- | 20.14 | 4707 | -- | -- |
| 108.63 | 0.489 | 11.9 | -0.0868 | 0.317 | -- | 1.07 | -- | -0.0751 | 3.7 | -- | -- | -- | -- |
| 111.91 | 0.495 | 11.9 | -0.103 | 0.332 | -- | -- | -- | -0.0814 | 4.31 | -- | -- | -- | -- |
| 85 | 0.429 | 11.8 | 0.538 | -- | -1.2 | -- | -- | 0.183 | -- | 18.3 | 4714 | -- | -- |
| 81.51 | 0.42 | 11.8 | -- | 0.364 | -1.02 | -- | -- | 0.104 | 3.72 | 19 | 3266 | -- | -- |
| 117.83 | 0.507 | 11.9 | -0.0899 | -- | -- | -- | -- | -0.0726 | -- | -- | -- | -- | -- |
| 112.19 | 0.495 | 11.9 | -- | 0.33 | -- | -- | -- | -0.0699 | 4.32 | -- | -- | -- | -- |
| 86.03 | 0.432 | 11.8 | -- | -- | -1.06 | -- | -- | 0.128 | -- | 18.8 | 1804 | -- | -- |
| 118.05 | 0.507 | 11.9 | -- | -- | -- | -- | -- | -0.0627 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 3 | 66.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 12 | 66.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 50 | 67.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 52 | 67.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 58 | 67.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 62 | 67.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 90 | 68.26 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 100 | 68.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 112 | 68.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 123 | 68.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 132 | 68.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 155 | 69.03 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 212 | 69.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 279 | 69.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 8 |
| 292 | 69.95 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 324 | 70.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 394 | 70.29 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 435 | 70.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 563 | 70.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 575 | 70.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 592 | 70.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 680 | 71.15 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 702 | 71.20 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 874 | 71.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |