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Os07g0523600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glucose-6-phosphate/phosphate-translocator precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0597) R2 : 0.516
β1 : -2.78 (0.219) R2dD : 0.179 R2D : 0.0703
β2 : 1.65 (0.159) R2dC : 0.13 R2C : 0.00619
β3 : -1.72 (0.164) R2dE : 0.132 R2E : -0.0152
β4 : -3.66 (0.635) R2dD*C : 0.0352 R2D*C : -0.00952
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.63 (0.128) R2dN8 : 0.232 R2N8 : 0.115
σ : 1.12
deviance : 574.29
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_____
C
peak time of C : 15.5
E
wheather : radiation
threshold : 12.52
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.93
open length of G : 14.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
559.75 1.11 12 -2.74 1.69 -1.81 -4.42 2.42 -1.64 15.7 11.6 10 5.93 14.1
574.29 1.12 12 -2.78 1.65 -1.72 -3.66 -- -1.63 15.5 12.52 10 5.93 14.1
615.34 1.16 12 -2.77 1.7 -1.84 -- 1.85 -1.67 15.7 11.4 10 5.93 14.1
614.74 1.15 12 -2.84 1.68 -1.81 -- -- -1.65 15.8 11.74 10 5.93 14.4
737.38 1.26 12 -2.88 -- -1.22 -- 1.12 -1.69 -- 11.35 5 5.83 14.9
703.33 1.24 12 -2.75 1.14 -- -3.45 -- -1.61 14.3 -- -- -- --
746.79 1.28 12 -2.84 1.13 -- -- -- -1.63 14 -- -- -- --
741.53 1.27 12 -2.9 -- -1.19 -- -- -1.69 -- 11.56 5 5.86 14.9
823.76 1.34 12 -- 1.72 -1.85 -- -- -1.39 16 10 8 5.92 14.6
823.42 1.34 12 -2.89 -- -- -- -- -1.66 -- -- -- -- --
959.8 1.45 11.9 -- 1.18 -- -- -- -1.31 14 -- -- -- --
956.79 1.44 12 -- -- -1.48 -- -- -1.36 -- 10 74 5.33 14.5
1043.68 1.51 12 -- -- -- -- -- -1.33 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 568.94 radiation 10.0 10 < th dose dependent rect. 6 14
14 582.65 radiation 10.0 10 < th dose independent rect. 6 14
33 589.91 radiation 10.0 10 < th dose dependent sin 22 NA
51 594.05 temperature 10.0 90 > th dose dependent rect. 20 9
110 603.42 atmosphere 1015.0 90 < th dose independent rect. 20 9
125 605.16 radiation 20.0 90 < th dose independent rect. 17 17
133 606.06 radiation 10.0 10 < th dose independent sin 21 NA
149 607.40 wind 1.0 90 > th dose independent rect. 4 16
153 607.97 temperature 10.0 1440 > th dose independent rect. 21 9
156 607.97 temperature 30.0 1440 < th dose independent rect. 21 9
160 607.97 humidity 50.0 1440 > th dose independent rect. 21 9
166 607.97 atmosphere 995.0 1440 > th dose independent rect. 21 9
167 607.97 radiation 20.0 1440 < th dose independent rect. 21 9
176 607.97 temperature 10.0 1440 > th dose independent rect. 6 15
186 608.76 atmosphere 995.0 90 > th dose independent rect. 5 15
187 608.77 radiation 10.0 10 < th dose dependent rect. 13 7
196 609.43 humidity 50.0 10 > th dose dependent rect. 6 14
218 611.06 radiation 10.0 10 > th dose independent rect. 9 23
231 611.80 wind 9.0 90 < th dose independent rect. 5 15
233 611.81 radiation 30.0 10 < th dose dependent rect. 16 19
247 612.86 atmosphere 1015.0 90 < th dose independent rect. 20 21
252 613.13 radiation 10.0 90 > th dose independent rect. 9 7
254 613.30 precipitation 0.1 90 < th dose independent rect. 20 9
255 613.30 precipitation 0.1 90 < th dose dependent rect. 20 9
256 613.31 radiation 1.0 90 < th dose dependent rect. 20 9
257 613.42 temperature 20.0 90 > th dose independent rect. 20 9
271 614.09 radiation 1.0 90 < th dose independent rect. 20 9
275 614.23 humidity 50.0 90 > th dose dependent rect. 20 9
282 614.54 radiation 30.0 90 < th dose dependent rect. 17 17
288 614.69 temperature 10.0 90 > th dose independent rect. 20 9
289 614.69 temperature 30.0 90 < th dose independent rect. 20 9
290 614.69 humidity 50.0 90 > th dose independent rect. 20 9
293 614.69 atmosphere 995.0 90 > th dose independent rect. 20 9
297 614.69 temperature 10.0 90 > th dose independent rect. 5 15
298 614.69 atmosphere 1015.0 90 < th dose independent rect. 5 15
299 614.71 wind 9.0 90 < th dose independent rect. 20 9
336 616.61 precipitation 0.1 90 < th dose independent rect. 5 15
338 616.61 precipitation 0.1 90 < th dose dependent rect. 5 15
361 617.60 radiation 30.0 10 < th dose dependent rect. 23 23
370 617.81 radiation 10.0 30 < th dose independent rect. 13 7
384 618.29 humidity 80.0 270 < th dose independent rect. 6 9
388 618.38 humidity 80.0 90 < th dose independent rect. 9 8
404 618.41 radiation 30.0 10 < th dose dependent rect. 16 22
433 618.91 radiation 10.0 10 > th dose independent sin 19 NA
446 619.52 radiation 20.0 10 < th dose independent rect. 17 17
453 619.60 radiation 20.0 10 < th dose independent rect. 16 23
494 620.49 humidity 90.0 30 < th dose dependent rect. 9 8
495 620.51 radiation 20.0 10 < th dose dependent rect. 3 23
521 621.11 temperature 10.0 90 > th dose dependent rect. 5 15
523 621.16 radiation 10.0 90 > th dose independent rect. 11 5
529 621.26 atmosphere 1000.0 90 > th dose independent rect. 17 3
549 622.05 atmosphere 1015.0 270 < th dose independent rect. 18 22
563 622.29 humidity 70.0 10 > th dose independent rect. 5 15
569 622.43 radiation 1.0 270 > th dose independent rect. 7 8
575 622.53 atmosphere 1000.0 270 > th dose independent rect. 14 6
584 622.66 radiation 30.0 10 < th dose dependent rect. 1 23
611 623.02 wind 1.0 90 > th dose independent rect. 17 16
615 623.11 wind 1.0 270 > th dose independent rect. 15 16
656 623.84 radiation 10.0 270 > th dose independent rect. 9 5
665 624.10 humidity 80.0 90 < th dose independent rect. 11 5
667 624.11 temperature 20.0 270 > th dose independent rect. 5 14
674 624.20 atmosphere 995.0 90 > th dose dependent rect. 16 4
695 624.60 radiation 20.0 10 < th dose dependent rect. 13 23
701 624.78 atmosphere 995.0 270 > th dose independent rect. 15 16
703 624.78 radiation 30.0 90 < th dose dependent rect. 11 23
705 624.79 radiation 20.0 10 < th dose dependent no NA NA
706 624.81 humidity 50.0 90 > th dose independent rect. 5 15
723 625.05 wind 9.0 90 < th dose dependent rect. 16 4
739 625.44 radiation 1.0 90 < th dose dependent rect. 20 14
749 625.57 radiation 20.0 10 < th dose independent rect. 23 23
750 625.58 humidity 80.0 270 < th dose independent rect. 9 5
760 625.70 radiation 20.0 10 < th dose dependent rect. 11 23
770 625.85 radiation 20.0 10 < th dose dependent rect. 5 19
778 626.08 precipitation 0.1 90 < th dose independent rect. 20 21
780 626.08 precipitation 0.1 90 < th dose dependent rect. 20 21
794 626.30 humidity 90.0 90 < th dose dependent rect. 11 5
800 626.34 radiation 20.0 90 < th dose independent rect. 11 23
820 626.61 wind 9.0 90 < th dose dependent rect. 20 9
831 626.77 wind 9.0 90 < th dose independent rect. 17 3
877 626.92 humidity 90.0 30 < th dose dependent rect. 7 10
897 627.26 radiation 10.0 10 > th dose independent rect. 11 21
907 627.42 temperature 10.0 90 > th dose independent rect. 17 3
909 627.42 atmosphere 1010.0 90 < th dose independent rect. 17 3
914 627.42 temperature 10.0 90 > th dose independent rect. 20 21
933 627.65 wind 1.0 90 > th dose independent rect. 17 3
938 627.70 temperature 20.0 90 > th dose independent rect. 20 21
942 627.74 atmosphere 995.0 90 > th dose independent rect. 17 16
954 627.86 humidity 90.0 270 < th dose dependent rect. 7 7
956 627.88 precipitation 0.1 90 < th dose independent rect. 17 3
958 627.88 precipitation 0.1 90 < th dose dependent rect. 17 3
963 627.95 radiation 20.0 10 < th dose dependent rect. 5 23