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Os08g0344600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0338) R2 : 0.899
β1 : -- (--) R2dD : -- R2D : --
β2 : 5.03 (0.0879) R2dC : 0.735 R2C : 0.664
β3 : 3.24 (0.104) R2dE : 0.216 R2E : 0.131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.598 (0.0711) R2dN8 : 0.0202 R2N8 : 0.0139
σ : 0.634
deviance : 185.46
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C
peak time of C : 19.2
E
wheather : temperature
threshold : 13.42
memory length : 215
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.43
open length of G : 7.28

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
177.47 0.626 12.4 -0.154 5.06 3.37 -0.248 -2.26 -0.621 19.3 13.49 224 7.28 7.3
185.22 0.634 12.4 -0.114 5.02 3.24 0.0164 -- -0.621 19.2 13.53 215 7.43 7.3
177.62 0.621 12.4 -0.149 5.05 3.37 -- -2.2 -0.623 19.3 13.47 223 7.28 7.3
185.19 0.634 12.4 -0.105 5.03 3.26 -- -- -0.612 19.2 13.68 215 7.43 7.28
250.98 0.738 12.2 -0.18 -- 5.48 -- -2.51 -0.572 -- -26.76 810 7.65 6.69
298.58 0.81 12.3 0.152 5.39 -- -0.74 -- -0.52 17.7 -- -- -- --
299.92 0.811 12.3 0.156 5.38 -- -- -- -0.524 17.7 -- -- -- --
247.05 0.732 12.2 -0.086 -- 5.34 -- -- -0.617 -- -22.02 822 7.56 6.52
185.46 0.634 12.4 -- 5.03 3.24 -- -- -0.598 19.2 13.42 215 7.43 7.28
1803.02 1.98 12.2 -0.0155 -- -- -- -- -0.652 -- -- -- -- --
300.56 0.811 12.3 -- 5.38 -- -- -- -0.541 17.7 -- -- -- --
247.05 0.732 12.2 -- -- 5.33 -- -- -0.612 -- -19.49 825 7.55 6.47
1803.03 1.98 12.2 -- -- -- -- -- -0.65 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.79 temperature 15 270 > th dose dependent rect. 7 7
10 188.86 temperature 20 10 > th dose dependent rect. 9 6
13 189.07 temperature 20 30 > th dose independent rect. 15 18
20 191.75 temperature 20 30 > th dose independent rect. 17 16
22 192.66 temperature 30 270 < th dose dependent rect. 20 7
31 194.06 temperature 20 10 > th dose dependent rect. 9 8
35 194.75 temperature 20 270 > th dose dependent rect. 9 2
46 196.47 temperature 25 270 > th dose independent rect. 8 5
51 196.97 temperature 30 10 < th dose dependent rect. 22 8
57 197.33 temperature 30 10 < th dose dependent rect. 20 10
143 206.38 temperature 25 270 > th dose independent rect. 9 2
204 210.23 temperature 20 10 > th dose dependent rect. 22 11
262 213.06 temperature 20 10 > th dose dependent rect. 24 9
301 214.59 temperature 20 90 > th dose independent rect. 23 10
309 214.71 temperature 10 270 > th dose dependent rect. 17 14
310 214.72 temperature 20 10 > th dose independent rect. 24 9
328 215.32 temperature 15 720 > th dose dependent rect. 20 3
337 215.51 temperature 20 10 > th dose independent rect. 22 11
347 215.99 temperature 15 10 > th dose dependent rect. 17 16
379 216.67 temperature 20 90 > th dose independent rect. 3 6
388 216.90 temperature 15 270 > th dose dependent rect. 2 5
391 217.05 temperature 25 270 > th dose dependent sin 6 NA
421 218.17 temperature 25 90 > th dose dependent sin 3 NA
430 218.40 temperature 25 270 < th dose independent rect. 2 17
434 218.46 temperature 20 10 < th dose independent rect. 23 7
450 218.89 wind 7 270 < th dose independent rect. 7 8
487 219.64 temperature 20 10 < th dose independent rect. 23 11
498 219.82 temperature 15 90 > th dose dependent rect. 19 13
506 220.07 temperature 20 10 > th dose independent rect. 2 7
526 220.49 humidity 80 270 > th dose independent rect. 2 7
561 221.10 radiation 20 270 < th dose dependent rect. 3 15
566 221.28 wind 7 90 < th dose independent rect. 9 6
658 223.13 radiation 30 270 < th dose independent rect. 13 18
660 223.14 radiation 1 270 > th dose independent rect. 7 8
676 223.35 temperature 30 10 < th dose dependent rect. 6 14
707 223.73 temperature 25 10 < th dose dependent sin 9 NA
709 223.75 wind 7 270 < th dose independent rect. 7 20
742 224.26 radiation 40 270 < th dose dependent rect. 13 18
795 225.13 atmosphere 1010 90 < th dose independent rect. 9 6
800 225.18 temperature 20 30 > th dose independent sin 9 NA
831 225.55 temperature 15 270 > th dose independent rect. 7 8
835 225.60 humidity 80 270 > th dose independent rect. 2 13
857 225.87 humidity 90 90 < th dose independent rect. 9 6
858 225.88 humidity 80 270 > th dose independent rect. 2 15
859 225.88 atmosphere 1015 90 < th dose independent rect. 15 18
881 226.13 humidity 80 270 < th dose independent rect. 22 15
883 226.15 wind 7 270 < th dose independent rect. 8 18
906 226.49 radiation 20 270 < th dose dependent rect. 3 6
910 226.54 temperature 15 90 > th dose independent rect. 9 6
931 226.75 atmosphere 1015 270 < th dose independent rect. 15 16
943 226.84 wind 7 10 < th dose independent rect. 9 6
957 226.97 temperature 20 30 < th dose independent sin 9 NA
963 227.04 humidity 80 270 > th dose independent rect. 3 4