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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0297400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phosphate/phosphoenolpyruvate translocator.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.84 (0.0275) R2 : 0.494
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.36 (0.113) R2dE : 0.512 R2E : 0.489
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.105 (0.0593) R2dN8 : 0.00478 R2N8 : -0.0176
σ : 0.514
deviance : 121.58
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 17.14
memory length : 278
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
113.85 0.501 4.8 0.549 0.41 2.67 1.02 2.53 0.0059 23 15.02 110 -- --
116.7 0.503 4.84 0.262 0.42 2.22 0.781 -- -0.0711 22.9 19.54 118 -- --
117.16 0.504 4.81 0.418 0.36 2.69 -- 1.89 -0.0167 22.3 1.419 140 -- --
118.36 0.507 4.85 0.213 0.387 2.2 -- -- -0.0766 22.4 19.13 122 -- --
118.73 0.507 4.8 0.468 -- 2.57 -- 2.05 0.00511 -- 4.864 282 -- --
190.6 0.647 4.77 0.715 0.798 -- 0.561 -- 0.29 17.4 -- -- -- --
191.34 0.648 4.77 0.714 0.801 -- -- -- 0.293 17.3 -- -- -- --
120.75 0.512 4.84 0.206 -- 2.15 -- -- -0.0743 -- 18.66 277 -- --
119.35 0.509 4.85 -- 0.369 2.45 -- -- -0.111 22.6 17.23 137 -- --
224.78 0.701 4.76 0.687 -- -- -- -- 0.273 -- -- -- -- --
204.79 0.669 4.79 -- 0.789 -- -- -- 0.213 17.4 -- -- -- --
121.58 0.514 4.84 -- -- 2.36 -- -- -0.105 -- 17.14 278 -- --
237.22 0.719 4.77 -- -- -- -- -- 0.197 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.35 temperature 15 270 > th dose dependent rect. 4 23
2 113.48 temperature 15 270 > th dose dependent rect. 17 23
6 114.19 temperature 15 90 > th dose dependent no NA NA
14 115.26 temperature 20 90 > th dose dependent rect. 1 23
15 115.29 temperature 30 270 < th dose dependent rect. 24 23
74 118.37 temperature 20 10 > th dose dependent rect. 9 23
80 118.57 temperature 20 90 > th dose dependent rect. 21 23
81 118.63 temperature 30 270 < th dose dependent no NA NA
84 118.89 temperature 20 90 > th dose dependent rect. 23 23
85 118.93 temperature 30 270 < th dose dependent rect. 13 23
93 119.27 temperature 30 270 < th dose dependent rect. 15 23
99 119.51 temperature 20 10 > th dose dependent rect. 21 23
100 119.52 temperature 30 270 < th dose dependent rect. 8 23
119 119.97 temperature 20 10 > th dose dependent rect. 23 23
198 122.65 temperature 30 30 < th dose dependent rect. 11 23
211 122.92 temperature 20 30 > th dose dependent rect. 15 23
212 122.92 temperature 30 270 < th dose dependent rect. 3 23
216 123.02 temperature 20 270 > th dose dependent rect. 11 23
247 123.62 temperature 30 30 < th dose dependent rect. 19 23
263 124.09 temperature 20 10 > th dose dependent rect. 13 23
293 124.65 temperature 30 30 < th dose dependent rect. 21 23
367 126.07 temperature 10 90 > th dose dependent sin 22 NA
424 126.73 temperature 20 10 > th dose dependent rect. 17 23
450 126.90 temperature 10 720 > th dose dependent sin 3 NA
472 127.07 temperature 20 1440 > th dose dependent rect. 24 11
504 127.32 temperature 10 1440 > th dose dependent rect. 24 12
561 127.60 temperature 30 1440 < th dose dependent rect. 1 10
575 127.65 temperature 10 1440 > th dose dependent rect. 21 15
632 127.90 temperature 30 1440 < th dose dependent rect. 17 19
651 128.00 temperature 20 10 > th dose dependent rect. 11 23
654 128.01 temperature 30 10 < th dose dependent rect. 7 23
675 128.10 temperature 30 720 < th dose dependent sin 1 NA
795 128.47 temperature 20 1440 > th dose dependent sin 8 NA
803 128.49 temperature 10 1440 > th dose dependent sin 7 NA
879 128.74 temperature 30 4320 < th dose dependent rect. 21 1
885 128.76 temperature 10 4320 > th dose dependent rect. 21 1
896 128.79 temperature 30 1440 < th dose dependent sin 8 NA