BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0463400 Os07g0463400|AK067630
(361 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0463400 Similar to RES protein 502 e-142
Os02g0674700 Zinc finger, RING-type domain containing protein 353 1e-97
Os04g0568900 Similar to RING finger protein 6 (RING-H2 prot... 312 3e-85
Os02g0735900 Zinc finger, RING-type domain containing protein 150 1e-36
Os05g0179000 Zinc finger, RING-type domain containing protein 128 6e-30
Os02g0787500 Zinc finger, RING-type domain containing protein 125 6e-29
Os01g0178700 Similar to Membrane associated protein with a ... 123 2e-28
Os09g0323100 Zinc finger, RING-type domain containing protein 120 1e-27
Os05g0389600 Zinc finger, RING-type domain containing protein 66 4e-11
AK064352 65 7e-11
>Os07g0463400 Similar to RES protein
Length = 361
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 261/361 (72%), Positives = 261/361 (72%)
Query: 1 MASAASPPRSGDAXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRLMR 60
MASAASPPRSGDA D SRRLMR
Sbjct: 1 MASAASPPRSGDASPSSPLLPSPTSPDRRSGGGGGGGRLLPGLRGAARFLGRTGSRRLMR 60
Query: 61 EPSVAVRETAAEHLEERQTDWAYSKPVVVLDXXXXXXXXXXXXXXXXXXXPESPSVPLRV 120
EPSVAVRETAAEHLEERQTDWAYSKPVVVLD PESPSVPLRV
Sbjct: 61 EPSVAVRETAAEHLEERQTDWAYSKPVVVLDVLWNLAFVAVAAAVLAASLPESPSVPLRV 120
Query: 121 WLAGYVLQCLFHVLCVTVEYXXXXXXXXXXXXXXXXXXXXXXFKLSIVKHLESANTMFSF 180
WLAGYVLQCLFHVLCVTVEY FKLSIVKHLESANTMFSF
Sbjct: 121 WLAGYVLQCLFHVLCVTVEYRRRREARGGGFGADQGAAADGDFKLSIVKHLESANTMFSF 180
Query: 181 IWWIIGFYWISAGGQALSHDAPQLYWLSIXXXXXXXXXXXXXXXXXXXIGIAVCCCLPCI 240
IWWIIGFYWISAGGQALSHDAPQLYWLSI IGIAVCCCLPCI
Sbjct: 181 IWWIIGFYWISAGGQALSHDAPQLYWLSIVFLAFDVFFVVFCVALACVIGIAVCCCLPCI 240
Query: 241 IAILYAVTDQEGASEEDINNLSKFKFRTMGDADKLVAGIAAPVGGVMTECGTNPPVEHFL 300
IAILYAVTDQEGASEEDINNLSKFKFRTMGDADKLVAGIAAPVGGVMTECGTNPPVEHFL
Sbjct: 241 IAILYAVTDQEGASEEDINNLSKFKFRTMGDADKLVAGIAAPVGGVMTECGTNPPVEHFL 300
Query: 301 SAEDAECCICLCPYEDGAELRELPCNHHFHCTCIDKWLHINATCPLCKFNIIKSNLGPED 360
SAEDAECCICLCPYEDGAELRELPCNHHFHCTCIDKWLHINATCPLCKFNIIKSNLGPED
Sbjct: 301 SAEDAECCICLCPYEDGAELRELPCNHHFHCTCIDKWLHINATCPLCKFNIIKSNLGPED 360
Query: 361 V 361
V
Sbjct: 361 V 361
>Os02g0674700 Zinc finger, RING-type domain containing protein
Length = 379
Score = 353 bits (906), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 175/327 (53%), Positives = 203/327 (62%), Gaps = 21/327 (6%)
Query: 56 RRLMREPSVAVRETAAEHLEERQTDWAYSKPVVVLDXXXXXXXXXXXXXXXXXXXPESPS 115
RR MREPS+ VRE AA+ LEERQ DWAYS+PVV LD ESPS
Sbjct: 53 RRAMREPSLLVREAAADQLEERQADWAYSRPVVALDLLWNLAFILVAAAVLALSREESPS 112
Query: 116 VPLRVWLAGYVLQCLFHVLCVTVEYXXXXXXXXXXXXXXXXXXXXXXFK----------- 164
+PLR+W+ GY +QC+ H+ CV +EY
Sbjct: 113 MPLRLWIVGYAVQCVLHMACVAIEYRMRRGQSGESPMAADEETGTDGSSSSSDEDAGERA 172
Query: 165 --------LSIVKHLESANTMFSFIWWIIGFYWISAGGQALSHDAPQLYWLSIXXXXXXX 216
+ I KHLESANTMFSFIWWIIGFYW+SAGGQ L+HDAPQLYWL I
Sbjct: 173 PRGRNGDYVRIAKHLESANTMFSFIWWIIGFYWVSAGGQVLTHDAPQLYWLCIVFLAFDV 232
Query: 217 XXXXXXXXXXXXIGIAVCCCLPCIIAILYAVTDQEGASEEDINNLSKFKFRTMGDADKLV 276
IGIAVCCCLPCIIAILYAV+DQEGASE+DI + ++KFR M + +K
Sbjct: 233 FFVVFCVALACIIGIAVCCCLPCIIAILYAVSDQEGASEDDIRQIPRYKFRRMDEPEKQS 292
Query: 277 AGIAAPVGGVMTECGTNPPVEHFLSAEDAECCICLCPYEDGAELRELPCNHHFHCTCIDK 336
+ GG+M ECGTN P+E L+AEDAECCICL Y+DGAELRELPC HHFHC CIDK
Sbjct: 293 VNMTGSSGGIMIECGTNQPIEKVLAAEDAECCICLSAYDDGAELRELPCGHHFHCVCIDK 352
Query: 337 WLHINATCPLCKFNIIK--SNLGPEDV 361
WLHINATCPLCKFN+ K S+ G E+V
Sbjct: 353 WLHINATCPLCKFNVRKNSSSSGSEEV 379
>Os04g0568900 Similar to RING finger protein 6 (RING-H2 protein)
Length = 307
Score = 312 bits (799), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 157/297 (52%), Positives = 178/297 (59%), Gaps = 19/297 (6%)
Query: 76 ERQTDWAYSKPVVVLDXXXXXXXXXXXXXXXXXXXPESPSVPLRVWLAGYVLQCLFHVLC 135
ERQ DWAYS+PVV LD E +PLR W+AGY LQC+ H++C
Sbjct: 1 ERQADWAYSRPVVALDLLWNLAFITVAAVVLVLSRGEDSPMPLRTWVAGYALQCVVHMVC 60
Query: 136 VTVEYXXXXXXXXXXXXXXXXXXXXXXFK-------------------LSIVKHLESANT 176
V +EY +SI KHLESANT
Sbjct: 61 VAIEYRMRRGQRDRAPASADEERGSDGSSSSSDDDVTEDDRRGSCTDCVSIAKHLESANT 120
Query: 177 MFSFIWWIIGFYWISAGGQALSHDAPQLYWLSIXXXXXXXXXXXXXXXXXXXIGIAVCCC 236
MFSFIWWIIGFYWISAGG+ + DAPQLYWL I IGIAVCCC
Sbjct: 121 MFSFIWWIIGFYWISAGGEDVIRDAPQLYWLCIVFLAFDVFFVVFCVALACIIGIAVCCC 180
Query: 237 LPCIIAILYAVTDQEGASEEDINNLSKFKFRTMGDADKLVAGIAAPVGGVMTECGTNPPV 296
LPCIIAILYAV+DQEGASE+DI + ++KFR + +K A P GG+MTECGTN P+
Sbjct: 181 LPCIIAILYAVSDQEGASEDDIRQIPRYKFRRTDEPEKQTADETGPFGGIMTECGTNQPI 240
Query: 297 EHFLSAEDAECCICLCPYEDGAELRELPCNHHFHCTCIDKWLHINATCPLCKFNIIK 353
E L+ EDAECCICL Y+DGAELRELPC HHFHC CIDKWLHINATCPLCKFNI K
Sbjct: 241 EKVLAPEDAECCICLSAYDDGAELRELPCGHHFHCACIDKWLHINATCPLCKFNIRK 297
>Os02g0735900 Zinc finger, RING-type domain containing protein
Length = 157
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 99/158 (62%), Gaps = 6/158 (3%)
Query: 200 DAPQLYWLSIXXXXXXXXXXXXXXXXXXXIGIAVCCCLPCIIAILYAVTDQEGASEEDIN 259
DAP+LYWLS+ IGIA+CCCLPC+IAILYA+ QEGAS+ DI
Sbjct: 1 DAPRLYWLSVVFLAFDVFFAVFCVAMACFIGIALCCCLPCVIAILYALAGQEGASDADIG 60
Query: 260 NLSKFKFRTMG-DADKLV-AGIAAPVGGVMTECGTNPPVEHFLSAEDAECCICLCPYEDG 317
L ++++ D K G+ PV + GT+ E L EDAECCICL YEDG
Sbjct: 61 FLPRYRYSDPSEDGQKGTDEGVMIPV---LNNSGTSTS-ERILLHEDAECCICLSSYEDG 116
Query: 318 AELRELPCNHHFHCTCIDKWLHINATCPLCKFNIIKSN 355
AEL LPCNHHFH TCI KWL ++ATCPLCK+NI+K +
Sbjct: 117 AELSALPCNHHFHWTCITKWLRMHATCPLCKYNILKGS 154
>Os05g0179000 Zinc finger, RING-type domain containing protein
Length = 407
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 96/189 (50%), Gaps = 14/189 (7%)
Query: 166 SIVKHLESANTMFSFIWWIIGFYWISAGGQALSHDAPQLYWLSIXXXXXXXXXXXXXXXX 225
+ H + A F +W+++G W+ GG + +HDAP LY L I
Sbjct: 201 AFADHFKMALDCFFAVWFVVGNVWV-FGGHSSAHDAPNLYRLCIAFLTFSCIGYAMPFIL 259
Query: 226 XXXIGIAVCCCLPCIIAILYAVTD---QEGASEEDINNLSKFKFRTMGDADKLVAGIAAP 282
I CCCLPCII+IL D GAS E IN L KF++ D G
Sbjct: 260 CALI----CCCLPCIISILGFREDLNQNRGASAETINALGTCKFKSKKTRD----GDGNE 311
Query: 283 VGGVMTECGTNPPVEHFLSAEDAECCICLCPYEDGAELRELPCNHHFHCTCIDKWLHINA 342
VG + GTN E +SAEDA CCICL Y D +LRELPC H FH C+DKWL INA
Sbjct: 312 VGVGVVAAGTNK--ERVISAEDAVCCICLARYVDNDDLRELPCAHFFHKDCVDKWLKINA 369
Query: 343 TCPLCKFNI 351
CPLCK I
Sbjct: 370 LCPLCKAEI 378
>Os02g0787500 Zinc finger, RING-type domain containing protein
Length = 342
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 166 SIVKHLESANTMFSFIWWIIGFYWISAGGQALSHDAPQLYWLSIXXXXXXXXXXXXXXXX 225
++ H + A F +W+++G WI GG++ + DAP LY L I
Sbjct: 137 ALFDHFKMALDCFFAVWFVVGNVWI-FGGRSSAADAPNLYRLCIVFLTFSCIGYAMPFIL 195
Query: 226 XXXIGIAVCCCLPCIIAIL---YAVTDQEGASEEDINNLSKFKFRTMGDADKLVAGIAAP 282
I CCCLPCII+++ + GA+ E IN+L +KF+T
Sbjct: 196 CAMI----CCCLPCIISVMGFREDTNNTRGATSESINSLPTYKFKTKKRRHSSGNEAEGQ 251
Query: 283 VGGVMTECGTNPPVEHFLSAEDAECCICLCPYEDGAELRELPCNHHFHCTCIDKWLHINA 342
GG++ GT+ E LSAEDA CCICL Y ELRELPC H FH C+DKWL INA
Sbjct: 252 DGGIVAA-GTDK--ERSLSAEDAVCCICLAKYAHNDELRELPCTHCFHKECVDKWLKINA 308
Query: 343 TCPLCKFNIIKSNLGPEDV 361
CPLCK I S+ G D
Sbjct: 309 LCPLCKSEIASSS-GTSDT 326
>Os01g0178700 Similar to Membrane associated protein with a RING finger,
4xtransmembrane domain, transcripts identified by EST
Length = 405
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 96/184 (52%), Gaps = 14/184 (7%)
Query: 178 FSFIWWIIGFYWISAGGQALSHDAPQLYWLSIXXXXXXXXXXXXXXXXXXXIGIAVCCCL 237
F +W+++G WI G +L HDAP LY L I I CCCL
Sbjct: 210 FFAVWFVVGNVWIFGGRTSL-HDAPNLYRLCIVFLAFGFIGYALPFILCTMI----CCCL 264
Query: 238 PCIIAILYAVTD---QEGASEEDINNLSKFKFRTMGDADKLVAGIAAPVGGVMTECGTNP 294
PCII+++ D GA+ E I+ L +KF++ K G A G + GT+
Sbjct: 265 PCIISMMGIHEDLDFNRGATAEAIDALVAYKFQS----KKFQDGEAGEDNGGVLAAGTDK 320
Query: 295 PVEHFLSAEDAECCICLCPYEDGAELRELPCNHHFHCTCIDKWLHINATCPLCKFNIIKS 354
E +SAEDA CCICL + + +LRELPCNH FH C+DKWL INA CPLCK ++ S
Sbjct: 321 --ERTISAEDAVCCICLSKFSNNEDLRELPCNHVFHLECVDKWLKINALCPLCKADLGGS 378
Query: 355 NLGP 358
P
Sbjct: 379 TNAP 382
>Os09g0323100 Zinc finger, RING-type domain containing protein
Length = 414
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 97/193 (50%), Gaps = 15/193 (7%)
Query: 167 IVKHLESANTMFSFIWWIIGFYWISAGGQALS--HDAPQLYWLSIXXXXXXXXXXXXXXX 224
+ H ++A F +W+++G WI G LS +AP +Y L +
Sbjct: 197 LAYHFKTAVDCFFAVWFVVGNVWIFGGHSTLSDSQEAPNMYRLCLAFLALSCVGYAIPFV 256
Query: 225 XXXXIGIAVCCCLPCIIAILYAVTD---QEGASEEDINNLSKFKF---RTMGDADKLVAG 278
+ A+CCC PC+I++L D GA++E I+ L +KF R+ D +
Sbjct: 257 ----MCAAICCCFPCLISLLRLQEDLGHTRGATQELIDALPTYKFKPKRSKMWVDHASSS 312
Query: 279 IAAPVGGVMTECGTNPPVEHFLSAEDAECCICLCPYEDGAELRELPCNHHFHCTCIDKWL 338
GG++ G E +SAEDA CCICL Y D ELRELPC H FH C+DKWL
Sbjct: 313 ENLSEGGIL---GPGTKKERIVSAEDAVCCICLTKYGDDDELRELPCTHFFHVQCVDKWL 369
Query: 339 HINATCPLCKFNI 351
INA CPLCK I
Sbjct: 370 KINAVCPLCKTEI 382
>Os05g0389600 Zinc finger, RING-type domain containing protein
Length = 549
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 303 EDAECCICLCPYEDGAELRELPCNHHFHCTCIDKWL-HINATCPLCKFNIIKSN 355
E A+C ICL Y +G +R LPCNH FH TC+DKWL I+ CPLC+ ++ +SN
Sbjct: 488 EAAQCYICLVEYAEGDCVRILPCNHEFHLTCVDKWLKEIHRVCPLCRGDVCRSN 541
>AK064352
Length = 290
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 301 SAEDAECCICLCPYEDGAELRELPCNHHFHCTCIDKWL-HINATCPLCKFNIIKSN 355
+ E A+C ICL Y +G +R LPCNH FH TC+DKWL I+ CPLC+ ++ +SN
Sbjct: 227 TEEAAQCYICLVEYAEGDCVRILPCNHEFHLTCVDKWLKEIHRVCPLCRGDVCRSN 282
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,913,454
Number of extensions: 315038
Number of successful extensions: 1296
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1382
Number of HSP's successfully gapped: 18
Length of query: 361
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 259
Effective length of database: 11,709,973
Effective search space: 3032883007
Effective search space used: 3032883007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 157 (65.1 bits)