Os04g0568900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING finger protein 6 (RING-H2 protein).
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Os04g0568900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING finger protein 6 (RING-H2 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.71 | 0.154 | 12.8 | 0.602 | 0.358 | -0.496 | 0.311 | 0.53 | 0.357 | 3.03 | 24.52 | 14 | -- | -- |
| 10.64 | 0.152 | 12.8 | 0.565 | 0.359 | -0.464 | 0.217 | -- | 0.361 | 3.08 | 23 | 17 | -- | -- |
| 10.78 | 0.153 | 12.8 | 0.527 | 0.374 | -0.468 | -- | -0.115 | 0.36 | 3.21 | 23 | 12 | -- | -- |
| 10.77 | 0.153 | 12.8 | 0.549 | 0.361 | -0.476 | -- | -- | 0.36 | 3.24 | 23 | 12 | -- | -- |
| 15.32 | 0.182 | 12.8 | 0.663 | -- | -0.837 | -- | 0.441 | 0.414 | -- | 23.95 | 14 | -- | -- |
| 13.92 | 0.175 | 12.9 | 0.465 | 0.546 | -- | 0.367 | -- | 0.291 | 3.01 | -- | -- | -- | -- |
| 14.36 | 0.177 | 12.9 | 0.457 | 0.549 | -- | -- | -- | 0.288 | 3.08 | -- | -- | -- | -- |
| 15.42 | 0.183 | 12.8 | 0.61 | -- | -0.805 | -- | -- | 0.403 | -- | 23.67 | 13 | -- | -- |
| 18.13 | 0.199 | 12.9 | -- | 0.428 | -0.327 | -- | -- | 0.271 | 3.17 | 24.1 | 13 | -- | -- |
| 31.56 | 0.262 | 12.9 | 0.481 | -- | -- | -- | -- | 0.303 | -- | -- | -- | -- | -- |
| 19.88 | 0.209 | 12.9 | -- | 0.558 | -- | -- | -- | 0.238 | 3.08 | -- | -- | -- | -- |
| 24.77 | 0.232 | 12.9 | -- | -- | -0.71 | -- | -- | 0.315 | -- | 24.2 | 12 | -- | -- |
| 37.66 | 0.286 | 12.9 | -- | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 5 | 10.21 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 7 | 10.22 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 8 | 10.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 16 | 10.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 18 | 10.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 29 | 10.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 10 |
| 30 | 10.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 35 | 10.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 50 | 10.39 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 73 | 10.43 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 79 | 10.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 124 | 10.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 169 | 10.52 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 178 | 10.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 179 | 10.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 197 | 10.55 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 295 | 10.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 331 | 10.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 350 | 10.68 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 362 | 10.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 363 | 10.69 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 376 | 10.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 389 | 10.71 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 405 | 10.72 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 406 | 10.72 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 478 | 10.76 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 591 | 10.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 618 | 10.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 852 | 10.88 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 897 | 10.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 964 | 10.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 988 | 10.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 9 |