BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0568900 Os04g0568900|AK070267
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0568900 Similar to RING finger protein 6 (RING-H2 prot... 508 e-144
Os02g0674700 Zinc finger, RING-type domain containing protein 449 e-127
Os07g0463400 Similar to RES protein 325 3e-89
Os02g0735900 Zinc finger, RING-type domain containing protein 160 8e-40
Os02g0787500 Zinc finger, RING-type domain containing protein 153 2e-37
Os09g0323100 Zinc finger, RING-type domain containing protein 144 6e-35
Os05g0179000 Zinc finger, RING-type domain containing protein 139 4e-33
Os01g0178700 Similar to Membrane associated protein with a ... 135 4e-32
>Os04g0568900 Similar to RING finger protein 6 (RING-H2 protein)
Length = 307
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 254/297 (85%), Positives = 254/297 (85%)
Query: 1 ERQADWAYSRPVVALDLLWNLAFITVAAVVLVLSRGEDSPMPLRTWVAGYALQCVVHMVC 60
ERQADWAYSRPVVALDLLWNLAFITVAAVVLVLSRGEDSPMPLRTWVAGYALQCVVHMVC
Sbjct: 1 ERQADWAYSRPVVALDLLWNLAFITVAAVVLVLSRGEDSPMPLRTWVAGYALQCVVHMVC 60
Query: 61 VAIEYRMRRGQRDRAPASAXXXXXXXXXXXXXXXXXXXXXXXXXCTDCVSIAKHLESANT 120
VAIEYRMRRGQRDRAPASA CTDCVSIAKHLESANT
Sbjct: 61 VAIEYRMRRGQRDRAPASADEERGSDGSSSSSDDDVTEDDRRGSCTDCVSIAKHLESANT 120
Query: 121 MFSFIWWIIGFYWISAGGEDVIRDAPQLYWLCIXXXXXXXXXXXXXXXXXXIIGIAVCCC 180
MFSFIWWIIGFYWISAGGEDVIRDAPQLYWLCI IIGIAVCCC
Sbjct: 121 MFSFIWWIIGFYWISAGGEDVIRDAPQLYWLCIVFLAFDVFFVVFCVALACIIGIAVCCC 180
Query: 181 LPCIIAILYAVSDQEGASEDDIRQIPRYKFRRTDEPEKQTADETGPFGGIMTECGTNQPI 240
LPCIIAILYAVSDQEGASEDDIRQIPRYKFRRTDEPEKQTADETGPFGGIMTECGTNQPI
Sbjct: 181 LPCIIAILYAVSDQEGASEDDIRQIPRYKFRRTDEPEKQTADETGPFGGIMTECGTNQPI 240
Query: 241 EKVLAPEDAECCICLSAYDDGAELRELPCGHHFHCACIDKWLHINATCPLCKFNIRK 297
EKVLAPEDAECCICLSAYDDGAELRELPCGHHFHCACIDKWLHINATCPLCKFNIRK
Sbjct: 241 EKVLAPEDAECCICLSAYDDGAELRELPCGHHFHCACIDKWLHINATCPLCKFNIRK 297
>Os02g0674700 Zinc finger, RING-type domain containing protein
Length = 379
Score = 449 bits (1156), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/307 (72%), Positives = 234/307 (76%)
Query: 1 ERQADWAYSRPVVALDLLWNLAFITVAAVVLVLSRGEDSPMPLRTWVAGYALQCVVHMVC 60
ERQADWAYSRPVVALDLLWNLAFI VAA VL LSR E MPLR W+ GYA+QCV+HM C
Sbjct: 73 ERQADWAYSRPVVALDLLWNLAFILVAAAVLALSREESPSMPLRLWIVGYAVQCVLHMAC 132
Query: 61 VAIEYRMRRGQRDRAPASAXXXXXXXXXXXXXXXXXXXXXXXXXCTDCVSIAKHLESANT 120
VAIEYRMRRGQ +P +A D V IAKHLESANT
Sbjct: 133 VAIEYRMRRGQSGESPMAADEETGTDGSSSSSDEDAGERAPRGRNGDYVRIAKHLESANT 192
Query: 121 MFSFIWWIIGFYWISAGGEDVIRDAPQLYWLCIXXXXXXXXXXXXXXXXXXIIGIAVCCC 180
MFSFIWWIIGFYW+SAGG+ + DAPQLYWLCI IIGIAVCCC
Sbjct: 193 MFSFIWWIIGFYWVSAGGQVLTHDAPQLYWLCIVFLAFDVFFVVFCVALACIIGIAVCCC 252
Query: 181 LPCIIAILYAVSDQEGASEDDIRQIPRYKFRRTDEPEKQTADETGPFGGIMTECGTNQPI 240
LPCIIAILYAVSDQEGASEDDIRQIPRYKFRR DEPEKQ+ + TG GGIM ECGTNQPI
Sbjct: 253 LPCIIAILYAVSDQEGASEDDIRQIPRYKFRRMDEPEKQSVNMTGSSGGIMIECGTNQPI 312
Query: 241 EKVLAPEDAECCICLSAYDDGAELRELPCGHHFHCACIDKWLHINATCPLCKFNIRKSGS 300
EKVLA EDAECCICLSAYDDGAELRELPCGHHFHC CIDKWLHINATCPLCKFN+RK+ S
Sbjct: 313 EKVLAAEDAECCICLSAYDDGAELRELPCGHHFHCVCIDKWLHINATCPLCKFNVRKNSS 372
Query: 301 SSGSEEV 307
SSGSEEV
Sbjct: 373 SSGSEEV 379
>Os07g0463400 Similar to RES protein
Length = 361
Score = 325 bits (833), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 177/307 (57%), Positives = 204/307 (66%), Gaps = 21/307 (6%)
Query: 1 ERQADWAYSRPVVALDLLWNLAFITVAAVVLVLSRGEDSPMPLRTWVAGYALQCVVHMVC 60
ERQ DWAYS+PVV LD+LWNLAF+ VAA VL S E +PLR W+AGY LQC+ H++C
Sbjct: 76 ERQTDWAYSKPVVVLDVLWNLAFVAVAAAVLAASLPESPSVPLRVWLAGYVLQCLFHVLC 135
Query: 61 VAIEYRMRRGQRDRAPASAXXXXXXXXXXXXXXXXXXXXXXXXXCTDCVSIAKHLESANT 120
V +EYR RR R + +SI KHLESANT
Sbjct: 136 VTVEYRRRREARGGGFGADQGAAADGDFK-------------------LSIVKHLESANT 176
Query: 121 MFSFIWWIIGFYWISAGGEDVIRDAPQLYWLCIXXXXXXXXXXXXXXXXXXIIGIAVCCC 180
MFSFIWWIIGFYWISAGG+ + DAPQLYWL I +IGIAVCCC
Sbjct: 177 MFSFIWWIIGFYWISAGGQALSHDAPQLYWLSIVFLAFDVFFVVFCVALACVIGIAVCCC 236
Query: 181 LPCIIAILYAVSDQEGASEDDIRQIPRYKFRRTDEPEKQTADETGPFGGIMTECGTNQPI 240
LPCIIAILYAV+DQEGASE+DI + ++KFR + +K A P GG+MTECGTN P+
Sbjct: 237 LPCIIAILYAVTDQEGASEEDINNLSKFKFRTMGDADKLVAGIAAPVGGVMTECGTNPPV 296
Query: 241 EKVLAPEDAECCICLSAYDDGAELRELPCGHHFHCACIDKWLHINATCPLCKFNIRKSGS 300
E L+ EDAECCICL Y+DGAELRELPC HHFHC CIDKWLHINATCPLCKFNI K S
Sbjct: 297 EHFLSAEDAECCICLCPYEDGAELRELPCNHHFHCTCIDKWLHINATCPLCKFNIIK--S 354
Query: 301 SSGSEEV 307
+ G E+V
Sbjct: 355 NLGPEDV 361
>Os02g0735900 Zinc finger, RING-type domain containing protein
Length = 157
Score = 160 bits (406), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 103/159 (64%), Gaps = 2/159 (1%)
Query: 144 DAPQLYWLCIXXXXXXXXXXXXXXXXXXIIGIAVCCCLPCIIAILYAVSDQEGASEDDIR 203
DAP+LYWL + IGIA+CCCLPC+IAILYA++ QEGAS+ DI
Sbjct: 1 DAPRLYWLSVVFLAFDVFFAVFCVAMACFIGIALCCCLPCVIAILYALAGQEGASDADIG 60
Query: 204 QIPRYKFRRTDEPEKQTADETGPFGGIMTECGTNQPIEKVLAPEDAECCICLSAYDDGAE 263
+PRY++ E ++ DE G ++ GT+ E++L EDAECCICLS+Y+DGAE
Sbjct: 61 FLPRYRYSDPSEDGQKGTDE-GVMIPVLNNSGTSTS-ERILLHEDAECCICLSSYEDGAE 118
Query: 264 LRELPCGHHFHCACIDKWLHINATCPLCKFNIRKSGSSS 302
L LPC HHFH CI KWL ++ATCPLCK+NI K S+
Sbjct: 119 LSALPCNHHFHWTCITKWLRMHATCPLCKYNILKGSESA 157
>Os02g0787500 Zinc finger, RING-type domain containing protein
Length = 342
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 140/303 (46%), Gaps = 17/303 (5%)
Query: 13 VALDLLWNLAFITVAAVVLVLSRGEDSPMPLRTWVAGYALQCVV---HMVCVAIEYRMRR 69
+++++L N++ I A VVL LSR E PL WV GY + C H+ I +
Sbjct: 34 ISIEVLVNVSQIVAAIVVLSLSRKEHPQAPLFEWVIGYTVGCFATLPHLYWRYIHRNIVN 93
Query: 70 GQRDRA---PASAXXXXXXXXXXXXXXXXXXXXXXXXXCTDCVSIAKHLESANTMFSFIW 126
G+ + A S+ ++ H + A F +W
Sbjct: 94 GENEPAHTLQGSSQNNSTEPSASASERRRNAARNAVLANPRINALFDHFKMALDCFFAVW 153
Query: 127 WIIGFYWISAGGEDVIRDAPQLYWLCIXXXXXXXXXXXXXXXXXXIIGIAVCCCLPCIIA 186
+++G WI GG DAP LY LCI I+ +CCCLPCII+
Sbjct: 154 FVVGNVWI-FGGRSSAADAPNLYRLCIVFLTFSCIGYAMPF----ILCAMICCCLPCIIS 208
Query: 187 IL---YAVSDQEGASEDDIRQIPRYKFRRTDEPEKQTADETGPFGGIMTECGTNQPIEKV 243
++ ++ GA+ + I +P YKF+ + G GGI+ GT++ E+
Sbjct: 209 VMGFREDTNNTRGATSESINSLPTYKFKTKKRRHSSGNEAEGQDGGIVAA-GTDK--ERS 265
Query: 244 LAPEDAECCICLSAYDDGAELRELPCGHHFHCACIDKWLHINATCPLCKFNIRKSGSSSG 303
L+ EDA CCICL+ Y ELRELPC H FH C+DKWL INA CPLCK I S +S
Sbjct: 266 LSAEDAVCCICLAKYAHNDELRELPCTHCFHKECVDKWLKINALCPLCKSEIASSSGTSD 325
Query: 304 SEE 306
+
Sbjct: 326 TRR 328
>Os09g0323100 Zinc finger, RING-type domain containing protein
Length = 414
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 140/300 (46%), Gaps = 25/300 (8%)
Query: 13 VALDLLWNLAFITVAAVVLVLSRGEDSPMPLRTWVAGYALQCV--VHMVCVAIEYRMRRG 70
++ +L+ + I A VLV SR E PL W+ GY + C+ + ++C +R R
Sbjct: 91 ISFELVIYVVQIVAAIFVLVFSRDEHPHAPLFAWIIGYTIGCIASIPLICWRCAHRNRPS 150
Query: 71 QRD-RAPASAXXXXXXXXXXXXXXXXXXXXXXXXXCTDCVS-----IAKHLESANTMFSF 124
+++ P +A C +A H ++A F
Sbjct: 151 EQEPEQPPAAYPNLTSSQSSEGRNQRSSGTVLHFGCITISCPRPSILAYHFKTAVDCFFA 210
Query: 125 IWWIIGFYWISAGGEDVIRD---APQLYWLCIXXXXXXXXXXXXXXXXXXIIGIAVCCCL 181
+W+++G WI GG + D AP +Y LC+ ++ A+CCC
Sbjct: 211 VWFVVGNVWI-FGGHSTLSDSQEAPNMYRLCLAFLALSCVGYAIPF----VMCAAICCCF 265
Query: 182 PCIIAILYAVSD---QEGASEDDIRQIPRYKFRRTDEP---EKQTADETGPFGGIMTECG 235
PC+I++L D GA+++ I +P YKF+ + ++ E GGI+ G
Sbjct: 266 PCLISLLRLQEDLGHTRGATQELIDALPTYKFKPKRSKMWVDHASSSENLSEGGIL---G 322
Query: 236 TNQPIEKVLAPEDAECCICLSAYDDGAELRELPCGHHFHCACIDKWLHINATCPLCKFNI 295
E++++ EDA CCICL+ Y D ELRELPC H FH C+DKWL INA CPLCK I
Sbjct: 323 PGTKKERIVSAEDAVCCICLTKYGDDDELRELPCTHFFHVQCVDKWLKINAVCPLCKTEI 382
>Os05g0179000 Zinc finger, RING-type domain containing protein
Length = 407
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 135/299 (45%), Gaps = 21/299 (7%)
Query: 13 VALDLLWNLAFITVAAVVLVLSRGEDSPMPLRTWVAGYALQCVVHMVCVAIEYRMRRGQR 72
++++L+ N++ I A VL +SR E PL WV GY + C + + Y R
Sbjct: 99 ISVELVVNVSQIIAAICVLSVSRNEHPHSPLFEWVIGYTVGCTATLPHLYWRYLHRNLPT 158
Query: 73 DRAPASAXXXXXXXXXXXXXXXXXXXXXXXXXCTDCVS-----IAKHLESANTMFSFIWW 127
+ V+ A H + A F +W+
Sbjct: 159 TGQEPTVQNIPPNNTPEANSYGVTGTNGVSRNNEATVNPRFQAFADHFKMALDCFFAVWF 218
Query: 128 IIGFYWISAGGEDVIRDAPQLYWLCIXXXXXXXXXXXXXXXXXXIIGIAVCCCLPCIIAI 187
++G W+ GG DAP LY LCI I+ +CCCLPCII+I
Sbjct: 219 VVGNVWV-FGGHSSAHDAPNLYRLCIAFLTFSCIGYAMPF----ILCALICCCLPCIISI 273
Query: 188 LYAVSD---QEGASEDDIRQIPRYKFRRTDEPEKQTADETGPFGGI-MTECGTNQPIEKV 243
L D GAS + I + KF+ K+T D G G+ + GTN+ E+V
Sbjct: 274 LGFREDLNQNRGASAETINALGTCKFK-----SKKTRDGDGNEVGVGVVAAGTNK--ERV 326
Query: 244 LAPEDAECCICLSAYDDGAELRELPCGHHFHCACIDKWLHINATCPLCKFNIRKSGSSS 302
++ EDA CCICL+ Y D +LRELPC H FH C+DKWL INA CPLCK I +S+
Sbjct: 327 ISAEDAVCCICLARYVDNDDLRELPCAHFFHKDCVDKWLKINALCPLCKAEIDGVSTSA 385
>Os01g0178700 Similar to Membrane associated protein with a RING finger,
4xtransmembrane domain, transcripts identified by EST
Length = 405
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 142/317 (44%), Gaps = 27/317 (8%)
Query: 1 ERQADWAYSRPVVALDLLWNLAFITVAAVVLVLSRGEDSPMPLRTWVAGYALQCVVHMVC 60
RQ + S ++++L+ +L+ I A VL +SR E PL W+ GY + CV +
Sbjct: 76 HRQPNPLNSGFWISIELIVSLSQIIAAITVLSVSRNEHPHAPLAQWLIGYTIGCVATLPH 135
Query: 61 VAIEYRMRRGQ-------------RDRAPASAXXXXXXXXXXXXXXXXXXXXXXXXXCTD 107
+ + R Q RD ++
Sbjct: 136 LYWRFLHRNRQNTEQESTNQVSSERDVYEPNSYVVVSSAHGSEVVDSGNNGGVARIASPR 195
Query: 108 CVSIAKHLESANTMFSFIWWIIGFYWISAGGEDVIRDAPQLYWLCIXXXXXXXXXXXXXX 167
++ + A F +W+++G WI GG + DAP LY LCI
Sbjct: 196 VYALVACFKLALDCFFAVWFVVGNVWI-FGGRTSLHDAPNLYRLCIVFLAFGFIGYALPF 254
Query: 168 XXXXIIGIAVCCCLPCIIAILYAVSD---QEGASEDDIRQIPRYKFRRTDEPEKQTADET 224
I+ +CCCLPCII+++ D GA+ + I + YKF + +K E
Sbjct: 255 ----ILCTMICCCLPCIISMMGIHEDLDFNRGATAEAIDALVAYKF----QSKKFQDGEA 306
Query: 225 GPFGGIMTECGTNQPIEKVLAPEDAECCICLSAYDDGAELRELPCGHHFHCACIDKWLHI 284
G G + GT++ E+ ++ EDA CCICLS + + +LRELPC H FH C+DKWL I
Sbjct: 307 GEDNGGVLAAGTDK--ERTISAEDAVCCICLSKFSNNEDLRELPCNHVFHLECVDKWLKI 364
Query: 285 NATCPLCKFNIRKSGSS 301
NA CPLCK ++ S ++
Sbjct: 365 NALCPLCKADLGGSTNA 381
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,162,218
Number of extensions: 390962
Number of successful extensions: 1554
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1642
Number of HSP's successfully gapped: 14
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)