Os01g0178700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Membrane associated protein with a RING finger, 4xtransmembrane domain, transcripts identified by EST.
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Os01g0178700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Membrane associated protein with a RING finger, 4xtransmembrane domain, transcripts identified by EST.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.9 | 0.376 | 7.38 | -0.973 | 0.744 | 1.53 | 0.0561 | -0.248 | -0.0201 | 2.76 | 20.19 | 3793 | -- | -- |
| 64.02 | 0.373 | 7.38 | -0.941 | 0.756 | 1.56 | 0.0129 | -- | -0.0237 | 2.78 | 20.15 | 3785 | -- | -- |
| 63.91 | 0.372 | 7.38 | -0.974 | 0.744 | 1.53 | -- | -0.246 | -0.0198 | 2.77 | 20.2 | 3792 | -- | -- |
| 63.47 | 0.371 | 7.39 | -0.844 | 0.749 | 1.44 | -- | -- | -0.041 | 2.83 | 21.12 | 3875 | -- | -- |
| 95.69 | 0.456 | 7.39 | -1 | -- | 1.66 | -- | -0.151 | -0.0299 | -- | 20.1 | 3879 | -- | -- |
| 109.06 | 0.49 | 7.28 | -0.00328 | 0.809 | -- | -0.0139 | -- | 0.415 | 2.59 | -- | -- | -- | -- |
| 109.06 | 0.489 | 7.28 | -0.00293 | 0.809 | -- | -- | -- | 0.415 | 2.59 | -- | -- | -- | -- |
| 92.24 | 0.447 | 7.36 | -0.64 | -- | 1.41 | -- | -- | 0.0237 | -- | 21.5 | 2486 | -- | -- |
| 69.41 | 0.388 | 7.34 | -- | 0.735 | 1.02 | -- | -- | 0.121 | 2.76 | 22 | 2297 | -- | -- |
| 147.42 | 0.567 | 7.27 | 0.0315 | -- | -- | -- | -- | 0.435 | -- | -- | -- | -- | -- |
| 109.06 | 0.489 | 7.28 | -- | 0.809 | -- | -- | -- | 0.415 | 2.59 | -- | -- | -- | -- |
| 98.75 | 0.463 | 7.35 | -- | -- | 1.09 | -- | -- | 0.0825 | -- | 22.37 | 2467 | -- | -- |
| 147.45 | 0.567 | 7.28 | -- | -- | -- | -- | -- | 0.432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 6 |
| 2 | 59.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 3 | 59.71 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 12 | 59.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 35 | 60.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 53 | 60.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 107 | 60.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 109 | 60.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 172 | 61.13 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 183 | 61.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 198 | 61.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 215 | 61.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 239 | 61.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 252 | 61.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 270 | 61.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 286 | 62.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 344 | 62.37 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 347 | 62.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 454 | 62.89 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 460 | 62.91 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 534 | 63.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 570 | 63.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 673 | 63.72 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 694 | 63.79 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 760 | 63.96 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 879 | 64.29 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 897 | 64.37 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 920 | 64.42 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 927 | 64.44 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 932 | 64.44 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 1 |