Os02g0735900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os02g0735900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.92 | 0.175 | 11.4 | 0.295 | 0.404 | -0.272 | 0.343 | 0.0828 | 0.149 | 3.17 | 24.09 | 828 | -- | -- |
| 13.78 | 0.173 | 11.4 | 0.274 | 0.407 | -0.262 | 0.364 | -- | 0.145 | 3.27 | 23.69 | 816 | -- | -- |
| 14.19 | 0.175 | 11.4 | 0.308 | 0.403 | -0.271 | -- | 0.128 | 0.152 | 3.25 | 23.8 | 799 | -- | -- |
| 14.16 | 0.175 | 11.4 | 0.255 | 0.386 | -0.259 | -- | -- | 0.148 | 3.28 | 23.7 | 774 | -- | -- |
| 18.46 | 0.201 | 11.4 | 0.184 | -- | -0.261 | -- | -0.261 | 0.0672 | -- | 27.1 | 1813 | -- | -- |
| 17.27 | 0.195 | 11.4 | 0.159 | 0.37 | -- | 0.344 | -- | 0.0293 | 3.78 | -- | -- | -- | -- |
| 17.62 | 0.197 | 11.4 | 0.154 | 0.372 | -- | -- | -- | 0.0273 | 3.83 | -- | -- | -- | -- |
| 17.54 | 0.195 | 11.4 | 0.333 | -- | -0.312 | -- | -- | 0.153 | -- | 25.7 | 179 | -- | -- |
| 15.77 | 0.185 | 11.4 | -- | 0.391 | -0.217 | -- | -- | 0.101 | 3.35 | 23.63 | 774 | -- | -- |
| 25.23 | 0.235 | 11.4 | 0.169 | -- | -- | -- | -- | 0.0373 | -- | -- | -- | -- | -- |
| 18.25 | 0.2 | 11.4 | -- | 0.375 | -- | -- | -- | 0.0102 | 3.82 | -- | -- | -- | -- |
| 18.8 | 0.202 | 11.4 | -- | -- | -0.3 | -- | -- | 0.118 | -- | 25.7 | 187 | -- | -- |
| 25.99 | 0.238 | 11.5 | -- | -- | -- | -- | -- | 0.0185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 4 | 13.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 8 | 13.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 10 | 13.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 11 | 13.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 38 | 13.87 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 50 | 13.88 | temperature | 25 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 57 | 13.89 | temperature | 25 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 75 | 13.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 78 | 13.94 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 88 | 13.95 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 114 | 13.98 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 153 | 14.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 167 | 14.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 175 | 14.02 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 178 | 14.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 228 | 14.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 256 | 14.08 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 272 | 14.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 308 | 14.11 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 311 | 14.11 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 322 | 14.11 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 332 | 14.11 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 341 | 14.12 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 342 | 14.12 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 347 | 14.12 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 351 | 14.12 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 357 | 14.13 | temperature | 25 | 1440 | > th | dose independent | sin | 20 | NA |
| 358 | 14.13 | temperature | 25 | 1440 | < th | dose independent | sin | 20 | NA |
| 360 | 14.13 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 366 | 14.13 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 375 | 14.13 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 15 |
| 389 | 14.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 394 | 14.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 400 | 14.14 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 403 | 14.14 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 404 | 14.14 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 454 | 14.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 2 |
| 456 | 14.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 460 | 14.15 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 581 | 14.17 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 583 | 14.17 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 598 | 14.17 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 600 | 14.17 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 623 | 14.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 639 | 14.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 681 | 14.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 713 | 14.20 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 721 | 14.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 22 |
| 725 | 14.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 755 | 14.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 789 | 14.22 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 795 | 14.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 861 | 14.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 952 | 14.24 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |