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Os02g0674700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0187) R2 : 0.156
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.362 (0.0394) R2dN8 : 0.201 R2N8 : 0.156
σ : 0.352
deviance : 56.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.9 0.265 10.8 0.606 0.328 -0.586 -0.0393 -1.7 0.44 4.08 30.45 79 -- --
33.96 0.274 10.8 0.612 0.318 -0.38 0.193 -- 0.418 4.36 10 72 -- --
31.9 0.263 10.8 0.604 0.329 -0.591 -- -1.7 0.44 4.08 31.02 79 -- --
33.77 0.272 10.8 0.609 0.304 -0.448 -- -- 0.418 5.32 1.675 69 -- --
36.42 0.281 10.8 0.674 -- -0.564 -- -0.904 0.443 -- 9.994 99 -- --
36.45 0.283 10.8 0.606 0.422 -- 0.269 -- 0.421 3.07 -- -- -- --
36.68 0.284 10.8 0.6 0.424 -- -- -- 0.419 3.15 -- -- -- --
37.71 0.286 10.8 0.611 -- -0.526 -- -- 0.453 -- -0.2005 99 -- --
43.53 0.309 10.8 -- 0.317 -0.429 -- -- 0.35 5.15 1.34 68 -- --
46.91 0.32 10.8 0.618 -- -- -- -- 0.43 -- -- -- -- --
46.18 0.318 10.8 -- 0.436 -- -- -- 0.352 3.15 -- -- -- --
47.55 0.321 10.8 -- -- -0.533 -- -- 0.386 -- -10.75 99 -- --
56.99 0.352 10.8 -- -- -- -- -- 0.362 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.79 temperature 15.0 270 > th dose dependent rect. 6 5
46 26.13 temperature 25.0 270 > th dose independent rect. 6 5
52 26.17 temperature 20.0 10 > th dose dependent rect. 8 6
81 26.59 temperature 25.0 90 > th dose dependent rect. 19 18
109 26.95 temperature 25.0 270 > th dose independent rect. 8 2
123 27.05 radiation 1.0 270 > th dose independent rect. 17 20
162 27.39 radiation 1.0 270 > th dose independent rect. 18 17
169 27.41 temperature 25.0 90 > th dose dependent sin 7 NA
175 27.45 radiation 1.0 270 > th dose independent rect. 5 6
195 27.52 radiation 1.0 270 > th dose independent sin 6 NA
206 27.58 radiation 1.0 270 < th dose independent sin 6 NA
217 27.61 temperature 20.0 90 > th dose independent rect. 13 18
222 27.64 humidity 90.0 270 < th dose independent rect. 6 5
251 27.72 temperature 20.0 10 > th dose independent rect. 14 18
271 27.81 temperature 10.0 270 > th dose dependent rect. 22 8
286 27.88 radiation 1.0 270 < th dose dependent sin 5 NA
332 28.02 wind 5.0 270 < th dose independent rect. 6 5
349 28.09 radiation 20.0 270 < th dose dependent sin 9 NA
351 28.10 humidity 60.0 270 > th dose independent rect. 6 5
366 28.16 wind 7.0 270 < th dose independent rect. 5 8
391 28.28 humidity 50.0 270 > th dose independent rect. 5 8
416 28.35 wind 9.0 270 < th dose dependent rect. 6 5
456 28.48 temperature 10.0 90 > th dose dependent rect. 14 17
467 28.54 humidity 90.0 90 < th dose independent rect. 7 7
477 28.57 temperature 15.0 270 > th dose independent rect. 5 8
480 28.58 wind 9.0 270 < th dose independent rect. 16 9
481 28.58 temperature 10.0 270 > th dose independent rect. 16 9
482 28.58 radiation 40.0 270 < th dose independent rect. 16 9
483 28.58 temperature 10.0 270 > th dose independent rect. 1 15
484 28.58 atmosphere 1015.0 270 < th dose independent rect. 1 15
488 28.60 precipitation 0.1 270 < th dose independent rect. 16 9
489 28.60 precipitation 0.1 270 < th dose dependent rect. 16 9
495 28.61 temperature 10.0 10 > th dose dependent rect. 14 18
496 28.62 atmosphere 1015.0 270 < th dose independent rect. 11 19
501 28.64 radiation 1.0 270 < th dose independent rect. 24 16
503 28.65 precipitation 0.1 270 < th dose independent rect. 5 8
505 28.65 precipitation 0.1 270 < th dose dependent rect. 5 8
515 28.68 precipitation 0.1 270 < th dose independent rect. 6 5
518 28.68 precipitation 0.1 270 < th dose dependent rect. 6 5
522 28.69 atmosphere 995.0 270 > th dose independent rect. 1 15
528 28.70 radiation 40.0 10 < th dose independent rect. 12 20
544 28.75 atmosphere 995.0 270 > th dose independent rect. 6 5
545 28.75 atmosphere 1015.0 270 < th dose independent rect. 6 5
547 28.75 temperature 10.0 270 > th dose independent rect. 11 19
551 28.76 atmosphere 995.0 270 > th dose independent rect. 5 8
552 28.76 atmosphere 1015.0 270 < th dose independent rect. 5 8
554 28.76 temperature 10.0 270 > th dose independent rect. 13 16
557 28.77 precipitation 0.1 270 < th dose independent rect. 18 17
560 28.77 precipitation 0.1 270 < th dose dependent rect. 18 17
562 28.79 humidity 50.0 10 > th dose independent rect. 8 6
582 28.82 radiation 1.0 270 > th dose dependent rect. 17 18
586 28.83 radiation 20.0 270 < th dose dependent rect. 23 10
605 28.88 wind 9.0 270 < th dose independent rect. 13 16
614 28.89 wind 9.0 270 < th dose independent rect. 1 15
615 28.89 radiation 1.0 270 > th dose dependent rect. 5 6
640 28.93 atmosphere 1015.0 270 < th dose independent rect. 13 16
641 28.93 humidity 60.0 270 > th dose independent rect. 18 17
644 28.93 temperature 30.0 10 < th dose dependent rect. 19 7
650 28.95 wind 9.0 270 < th dose independent rect. 11 19
657 28.97 radiation 1.0 270 < th dose dependent rect. 24 16
661 28.98 radiation 40.0 270 < th dose dependent rect. 16 9
670 28.99 radiation 40.0 90 < th dose independent rect. 2 16
671 28.99 radiation 40.0 90 < th dose independent rect. 13 18
683 29.01 radiation 40.0 270 < th dose independent rect. 11 19
704 29.04 humidity 90.0 10 < th dose independent rect. 8 6
717 29.04 atmosphere 995.0 270 > th dose independent rect. 11 19
723 29.05 wind 1.0 10 > th dose independent rect. 8 6
727 29.05 atmosphere 995.0 270 > th dose independent rect. 13 16
730 29.05 radiation 10.0 43200 < th dose dependent rect. 20 7
765 29.12 radiation 1.0 270 > th dose dependent sin 10 NA
772 29.13 humidity 80.0 270 < th dose independent rect. 19 16
775 29.13 atmosphere 1015.0 10 < th dose independent rect. 14 18
786 29.14 humidity 50.0 10 > th dose independent rect. 8 18
791 29.16 temperature 30.0 10 < th dose independent rect. 2 17
795 29.17 atmosphere 1010.0 90 < th dose independent rect. 8 5
816 29.21 radiation 40.0 270 < th dose independent rect. 11 6
827 29.22 precipitation 0.1 90 < th dose independent rect. 7 7
830 29.22 precipitation 0.1 90 < th dose dependent rect. 7 7
835 29.23 humidity 80.0 270 > th dose independent rect. 23 7
852 29.25 precipitation 0.1 270 < th dose independent rect. 1 15
855 29.25 precipitation 0.1 270 < th dose dependent rect. 1 15
860 29.26 wind 1.0 90 > th dose independent rect. 7 7
865 29.26 humidity 80.0 90 < th dose independent rect. 19 18
871 29.27 wind 7.0 10 < th dose independent rect. 8 6
874 29.27 temperature 20.0 10 > th dose independent rect. 24 8
883 29.28 wind 7.0 270 < th dose independent rect. 18 17
914 29.32 temperature 20.0 10 > th dose independent rect. 2 6
928 29.35 atmosphere 1010.0 10 < th dose independent rect. 8 6
930 29.35 temperature 10.0 270 > th dose independent rect. 11 7
931 29.35 atmosphere 1015.0 270 < th dose independent rect. 11 7
932 29.35 temperature 10.0 270 > th dose independent rect. 18 17
939 29.35 radiation 40.0 90 < th dose dependent rect. 2 15
944 29.36 atmosphere 995.0 270 > th dose independent rect. 16 9
976 29.38 atmosphere 995.0 90 > th dose independent rect. 7 7
977 29.38 atmosphere 1015.0 90 < th dose independent rect. 7 7
985 29.38 wind 1.0 270 > th dose independent rect. 16 9