BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0249200 Os07g0249200|AK059902
(248 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0249200 Similar to Vesicle-associated membrane protein... 402 e-112
Os07g0194000 Similar to Vesicle-associated membrane protein... 246 2e-65
Os03g0803000 Longin domain containing protein 241 5e-64
Os03g0165800 Similar to Vesicle-associated membrane protein... 233 1e-61
Os12g0639800 Similar to Vesicle-associated membrane protein... 201 4e-52
Os08g0558600 Longin domain containing protein 200 8e-52
Os10g0154000 Similar to Vesicle-associated membrane protein... 116 2e-26
Os06g0174400 Similar to Vesicle-associated membrane protein... 108 5e-24
Os02g0803600 Longin-like domain containing protein 106 2e-23
>Os07g0249200 Similar to Vesicle-associated membrane protein 724 (AtVAMP724)
(SYBL1-like protein)
Length = 248
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/248 (80%), Positives = 200/248 (80%)
Query: 1 MASPPXXXXXXXXXXXXXXAEWLIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLXXXX 60
MASPP AEWLIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRL
Sbjct: 1 MASPPGKKGEGGGDGGGGKAEWLIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLPASG 60
Query: 61 XXXXXXXXXXRFSYACDGHTFNFLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYG 120
RFSYACDGHTFNFLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYG
Sbjct: 61 GGGSGGGAPARFSYACDGHTFNFLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYG 120
Query: 121 GGKADTALAKSLNKEYGPVIKQHMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLG 180
GGKADTALAKSLNKEYGPVIKQHMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLG
Sbjct: 121 GGKADTALAKSLNKEYGPVIKQHMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLG 180
Query: 181 RGEKLSELQDKTSDLQSQAQEFKKKGVKIRRKTWLQNMKXXXXXXXXXXXXXXXXXXXXC 240
RGEKLSELQDKTSDLQSQAQEFKKKGVKIRRKTWLQNMK C
Sbjct: 181 RGEKLSELQDKTSDLQSQAQEFKKKGVKIRRKTWLQNMKIKLVVLGILLLLVIIVWVSVC 240
Query: 241 QGFDCTKH 248
QGFDCTKH
Sbjct: 241 QGFDCTKH 248
>Os07g0194000 Similar to Vesicle-associated membrane protein 725 (AtVAMP725)
Length = 220
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/223 (56%), Positives = 156/223 (69%), Gaps = 9/223 (4%)
Query: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLXXXXXXXXXXXXXXRFSYACDGHTFN 82
LIYAFVARGT VLAEYTEFTGNF +AAQCLQ+L +F+Y CDGHTFN
Sbjct: 6 LIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNN---------KFTYNCDGHTFN 56
Query: 83 FLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADTALAKSLNKEYGPVIKQ 142
+L+ G+ YCVVA ESV + + +AFL+R+K+DF KRYGGGKA TA A SLN+E+G +K+
Sbjct: 57 YLVEDGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKE 116
Query: 143 HMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLGRGEKLSELQDKTSDLQSQAQEF 202
HMQY +DH EEI K KV+AQVSEVK +M+ENIEK L RGEK+ L DKT +L+SQAQ+F
Sbjct: 117 HMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 176
Query: 203 KKKGVKIRRKTWLQNMKXXXXXXXXXXXXXXXXXXXXCQGFDC 245
+++G K+RRK WLQNMK C GF C
Sbjct: 177 RQQGTKVRRKMWLQNMKIKLIVLGIIIALILIIILSVCHGFKC 219
>Os03g0803000 Longin domain containing protein
Length = 220
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 122/223 (54%), Positives = 153/223 (68%), Gaps = 9/223 (4%)
Query: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLXXXXXXXXXXXXXXRFSYACDGHTFN 82
LIYAFVARGT +LAEYTEFTGNF +A+QCL +L +F+Y CDGHTFN
Sbjct: 6 LIYAFVARGTVILAEYTEFTGNFTTIASQCLMKLPASNN---------KFTYNCDGHTFN 56
Query: 83 FLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADTALAKSLNKEYGPVIKQ 142
+L+ G+ YCVVA ESV + + +AFL+R+KDDF KRY GGKA TA A SLN+++G +K+
Sbjct: 57 YLVEDGFTYCVVAVESVGRQIPIAFLDRVKDDFTKRYAGGKAATAAANSLNRDFGSKLKE 116
Query: 143 HMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLGRGEKLSELQDKTSDLQSQAQEF 202
HMQY +DH EEI K KV+AQVSEVK +M+ENIEK L RGEK+ L DKT +L+SQAQ+F
Sbjct: 117 HMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 176
Query: 203 KKKGVKIRRKTWLQNMKXXXXXXXXXXXXXXXXXXXXCQGFDC 245
++ G ++RRK WLQNMK C GF C
Sbjct: 177 RQAGTQVRRKMWLQNMKIKLIVLGIIIALILIIILSVCHGFKC 219
>Os03g0165800 Similar to Vesicle-associated membrane protein 725 (AtVAMP725)
Length = 223
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 146/223 (65%), Gaps = 9/223 (4%)
Query: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLXXXXXXXXXXXXXXRFSYACDGHTFN 82
L+Y+FVARG VLA++ E +GNF ++AAQCLQ+L R SY CDGHTFN
Sbjct: 9 LVYSFVARGAVVLADHAEVSGNFASVAAQCLQKLPSTNN---------RHSYNCDGHTFN 59
Query: 83 FLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADTALAKSLNKEYGPVIKQ 142
+ +H G+ YCVVA ES + + V F+ER+K+DF K+Y GGKA A A SL +EYGP +K+
Sbjct: 60 YHVHDGFTYCVVATESAGRQLPVGFIERVKEDFSKKYSGGKAKNATANSLKREYGPKLKE 119
Query: 143 HMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLGRGEKLSELQDKTSDLQSQAQEF 202
HM+Y H EEI+K KV+AQV+EVK +M++NIEK L RGEK+ L DKT DL+SQAQ+F
Sbjct: 120 HMKYCDAHPEEIDKLAKVKAQVTEVKGVMMQNIEKVLDRGEKIELLVDKTEDLRSQAQDF 179
Query: 203 KKKGVKIRRKTWLQNMKXXXXXXXXXXXXXXXXXXXXCQGFDC 245
+K G KIRRK W +NMK C+ +C
Sbjct: 180 RKAGTKIRRKMWWENMKMKLIVFGIVVALILVIILTVCRDLNC 222
>Os12g0639800 Similar to Vesicle-associated membrane protein 722 (AtVAMP722)
(Synaptobrevin- related protein 1)
Length = 212
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 139/201 (69%), Gaps = 13/201 (6%)
Query: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLXXXXXXXXXXXXXXRFSYACDGHTFN 82
LIYA VARGT VLAE+T + GNF +AAQCLQ+L R +Y CD HTFN
Sbjct: 6 LIYAMVARGTVVLAEHTAYAGNFRDIAAQCLQKLPAGDN---------RLTYTCDAHTFN 56
Query: 83 FLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADTALAKSLNKEYGPVIKQ 142
FL+H+GYAYCVVA ES + + +A L+ +K+DF KRY GGKA TA A SL++++GP + +
Sbjct: 57 FLIHQGYAYCVVATESSGRQIPLALLDMIKEDFNKRYAGGKAATAAANSLSRDFGPRLGE 116
Query: 143 HMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLGRGEKLSELQDKTSDLQSQ---- 198
M+Y +DH EE+ K KV+AQVSEVK IM+ENI+K + RG+++ L +T L Q
Sbjct: 117 QMKYCMDHPEEVSKLAKVKAQVSEVKGIMMENIDKAIDRGQQIDVLVSRTEQLHDQAGIS 176
Query: 199 AQEFKKKGVKIRRKTWLQNMK 219
A +F+++G ++RRK W QNMK
Sbjct: 177 AADFRQQGTRVRRKMWYQNMK 197
>Os08g0558600 Longin domain containing protein
Length = 241
Score = 200 bits (508), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 143/243 (58%), Gaps = 29/243 (11%)
Query: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLXXXXXXXXXXXXXXRFSYACDGHTFN 82
LIY+FVA+G+ VLAE+T F+GNF +A QCLQ+L + +Y+CDGHTFN
Sbjct: 8 LIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNTS---------KSTYSCDGHTFN 58
Query: 83 FLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADT---------------- 126
FL+ RG+ + VVA E+V ++V FL+R+K+DFM+RYG +
Sbjct: 59 FLVDRGFVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLADDADDDDFLL 118
Query: 127 ----ALAKSLNKEYGPVIKQHMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLGRG 182
++A +L++E+GP +K HM Y ++H EEI K KV+A ++EVK IM++NIEK L RG
Sbjct: 119 EDRFSIAYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERG 178
Query: 183 EKLSELQDKTSDLQSQAQEFKKKGVKIRRKTWLQNMKXXXXXXXXXXXXXXXXXXXXCQG 242
EK+ L KT LQSQA F + G ++RRK WLQN++ C G
Sbjct: 179 EKIELLVGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLIICGG 238
Query: 243 FDC 245
F C
Sbjct: 239 FKC 241
>Os10g0154000 Similar to Vesicle-associated membrane protein 714 (AtVAMP714)
Length = 226
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 114/204 (55%), Gaps = 18/204 (8%)
Query: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLXXXXXXXXXXXXXXRFSYACDGHTFN 82
++YA VARGT VLAE++ +GN A+A + L++L R +A D + F+
Sbjct: 3 IVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAES--------RLCFAQDRYIFH 54
Query: 83 FL------LHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADTALAKSLNKEY 136
L G + +A ++ + + +LE ++ F+K YG A ALA ++N E+
Sbjct: 55 VLRSPPPAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGR-IAHNALAYAMNDEF 113
Query: 137 GPVIKQHMQYVLDHSEEIEKTL-KVQAQVSEVKNIMLENIEKTLGRGEKLSELQDKTSDL 195
V+ Q M+Y S TL +++ +VSE+ +M++NIEK L RGE++S L DKTS +
Sbjct: 114 SRVLHQQMEYF--SSNPSADTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTM 171
Query: 196 QSQAQEFKKKGVKIRRKTWLQNMK 219
Q A F+K+ ++RR W++N K
Sbjct: 172 QDSAFHFRKQSRRLRRALWMKNAK 195
>Os06g0174400 Similar to Vesicle-associated membrane protein 712 (AtVAMP712)
Length = 221
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 9/221 (4%)
Query: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLXXXXXXXXXXXXXXRFSYACDGHTFN 82
++YA VARGT VLAE++ N A+A Q L+RL SY D + F+
Sbjct: 3 ILYAVVARGTVVLAEHSAAATNAGAVARQVLERLPGGGADS-------HVSYTQDRYVFH 55
Query: 83 FLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADTALAKSLNKEYGPVIKQ 142
G +A E+ + + AFLE + F+K YG A T+LA +N E+ V+ Q
Sbjct: 56 AKRTDGITALCMADEAAGRRIPFAFLEDIHGRFVKTYGRA-ALTSLAYGMNDEFSRVLSQ 114
Query: 143 HMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLGRGEKLSELQDKTSDLQSQAQEF 202
M Y + ++ +++ ++S+V+ +M++NI+K L RG++L L DKT+++Q F
Sbjct: 115 QMDY-YSNDPNADRINRMRGEISQVRTVMIDNIDKVLERGDRLDMLVDKTANMQGNTIRF 173
Query: 203 KKKGVKIRRKTWLQNMKXXXXXXXXXXXXXXXXXXXXCQGF 243
K++ + R TW +N+K C GF
Sbjct: 174 KRQARRFRNTTWWRNVKLTIALIFLLTVIIYVVLVFMCHGF 214
>Os02g0803600 Longin-like domain containing protein
Length = 226
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 4/219 (1%)
Query: 25 YAFVARGTAVLAEYTEFTGNFPALAAQCLQRLXXXXXXXXXXXXXXRFSYACDGHTFNFL 84
YA VARG V+AE+ + FP A Q L SY D H F+
Sbjct: 6 YAAVARGAVVMAEHGD--AAFPNAGAVARQILDRLSAGDGGGGGDCNISYTQDLHVFHVK 63
Query: 85 LHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADTALAKSLNKEYGPVIKQHM 144
G +A ++ + + AFLE + F+K YG A TALA ++N E+ V+ Q M
Sbjct: 64 RTDGVTALCMADDAAGRRIPFAFLEDIHGRFVKTYGRA-ALTALAYAMNDEFSRVLGQQM 122
Query: 145 QYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLGRGEKLSELQDKTSDLQSQAQEFKK 204
Y + ++ +++ ++ +V+N+M++NI+K L RG++L L DKT+ +Q FK+
Sbjct: 123 DY-YSNDPNADRISRMRGEMDQVRNVMIDNIDKVLERGDRLELLVDKTATMQGNTMRFKR 181
Query: 205 KGVKIRRKTWLQNMKXXXXXXXXXXXXXXXXXXXXCQGF 243
+ + R W +N+K C GF
Sbjct: 182 QARRFRNTVWWRNVKLTAASVFILLVIIYIVLVYMCHGF 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,162,722
Number of extensions: 198646
Number of successful extensions: 634
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 9
Length of query: 248
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 150
Effective length of database: 11,918,829
Effective search space: 1787824350
Effective search space used: 1787824350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)