BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0223100 Os07g0223100|D29691
(48 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0223400 Similar to ADP-ribosylation factor 1 103 3e-23
Os03g0811900 Similar to ADP-ribosylation factor 103 3e-23
Os01g0265100 Similar to ADP-ribosylation factor 102 7e-23
Os07g0223100 Similar to ADP-ribosylation factor 1 101 2e-22
Os01g0813400 Similar to ADP-ribosylation factor 1 100 2e-22
Os05g0489600 Similar to ADP-ribosylation factor 1 100 4e-22
AK062677 78 2e-15
Os11g0586900 Similar to ADP-ribosylation factor-like protein 5 65 8e-12
Os02g0128600 Similar to ADP-ribosylation factor-like protein 63 4e-11
>Os07g0223400 Similar to ADP-ribosylation factor 1
Length = 181
Score = 103 bits (257), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/48 (100%), Positives = 48/48 (100%)
Query: 1 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA 48
MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA
Sbjct: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA 181
>Os03g0811900 Similar to ADP-ribosylation factor
Length = 181
Score = 103 bits (257), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/48 (100%), Positives = 48/48 (100%)
Query: 1 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA 48
MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA
Sbjct: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA 181
>Os01g0265100 Similar to ADP-ribosylation factor
Length = 181
Score = 102 bits (254), Expect = 7e-23, Method: Composition-based stats.
Identities = 47/48 (97%), Positives = 48/48 (100%)
Query: 1 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA 48
MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIA+KA
Sbjct: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIANKA 181
>Os07g0223100 Similar to ADP-ribosylation factor 1
Length = 48
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/48 (100%), Positives = 48/48 (100%)
Query: 1 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA 48
MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA
Sbjct: 1 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA 48
>Os01g0813400 Similar to ADP-ribosylation factor 1
Length = 181
Score = 100 bits (250), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/48 (95%), Positives = 48/48 (100%)
Query: 1 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA 48
MNAAEITDKLGLHSLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIASKA
Sbjct: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181
>Os05g0489600 Similar to ADP-ribosylation factor 1
Length = 181
Score = 99.8 bits (247), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 48/48 (100%)
Query: 1 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA 48
MNAAEITDKLGLHSLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA+KA
Sbjct: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181
>AK062677
Length = 181
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/47 (68%), Positives = 40/47 (85%)
Query: 1 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASK 47
M+AAE+TDKLGLH LR R W+IQ+ CATTG+GLYEGLDWLS+ + +
Sbjct: 134 MSAAEMTDKLGLHGLRHRQWFIQACCATTGDGLYEGLDWLSATLQKR 180
>Os11g0586900 Similar to ADP-ribosylation factor-like protein 5
Length = 184
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 1 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASKA 48
M+ AEITD L LHS++ W+IQ++CA TGEGLY+GL W++ +A KA
Sbjct: 134 MSPAEITDALSLHSIKNHDWHIQASCAITGEGLYDGLGWIAQKVAGKA 181
>Os02g0128600 Similar to ADP-ribosylation factor-like protein
Length = 194
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 1 MNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNI 44
M+ E+++ LGLH LR R W+IQ TCA GEGLY+GLDWL+S +
Sbjct: 134 MSPDEVSEGLGLHDLRNRIWHIQGTCALRGEGLYDGLDWLASTL 177
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.128 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,526,735
Number of extensions: 36112
Number of successful extensions: 76
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 9
Length of query: 48
Length of database: 17,035,801
Length adjustment: 21
Effective length of query: 27
Effective length of database: 15,939,307
Effective search space: 430361289
Effective search space used: 430361289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)