Os07g0223100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ADP-ribosylation factor 1.
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Os07g0223100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ADP-ribosylation factor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.59 | 0.251 | 13.5 | 0.678 | 0.441 | -0.828 | -0.158 | 0.595 | 0.559 | 3.53 | 24.11 | 12 | -- | -- |
| 28.74 | 0.252 | 13.5 | 0.594 | 0.453 | -0.777 | -0.256 | -- | 0.532 | 3.56 | 24.1 | 14 | -- | -- |
| 28.65 | 0.249 | 13.5 | 0.704 | 0.441 | -0.834 | -- | 0.775 | 0.566 | 3.49 | 24.1 | 14 | -- | -- |
| 28.94 | 0.252 | 13.5 | 0.595 | 0.458 | -0.76 | -- | -- | 0.532 | 3.53 | 24.1 | 14 | -- | -- |
| 35.37 | 0.277 | 13.5 | 0.85 | -- | -1.26 | -- | 1.31 | 0.64 | -- | 24.1 | 17 | -- | -- |
| 38 | 0.289 | 13.6 | 0.473 | 0.761 | -- | 0.0028 | -- | 0.441 | 3.24 | -- | -- | -- | -- |
| 38 | 0.289 | 13.6 | 0.472 | 0.761 | -- | -- | -- | 0.441 | 3.24 | -- | -- | -- | -- |
| 36.2 | 0.28 | 13.5 | 0.683 | -- | -1.18 | -- | -- | 0.593 | -- | 24.1 | 18 | -- | -- |
| 37.72 | 0.288 | 13.6 | -- | 0.529 | -0.629 | -- | -- | 0.438 | 3.43 | 24.6 | 8 | -- | -- |
| 70.81 | 0.393 | 13.6 | 0.505 | -- | -- | -- | -- | 0.461 | -- | -- | -- | -- | -- |
| 43.88 | 0.31 | 13.6 | -- | 0.77 | -- | -- | -- | 0.388 | 3.24 | -- | -- | -- | -- |
| 47.95 | 0.324 | 13.5 | -- | -- | -1.11 | -- | -- | 0.484 | -- | 24.6 | 8 | -- | -- |
| 77.53 | 0.411 | 13.6 | -- | -- | -- | -- | -- | 0.405 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.37 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 3 | 26.39 | temperature | 15 | 270 | > th | dose dependent | sin | 3 | NA |
| 13 | 26.66 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 45 | 27.23 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 50 | 27.32 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 54 | 27.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 65 | 27.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 14 |
| 91 | 27.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 98 | 27.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 101 | 27.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 105 | 28.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 116 | 28.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 151 | 28.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 192 | 28.52 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 194 | 28.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 195 | 28.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 200 | 28.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 212 | 28.60 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 217 | 28.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 239 | 28.68 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 324 | 28.87 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 403 | 29.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 407 | 29.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 467 | 29.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 11 |
| 624 | 29.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 658 | 29.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 688 | 29.47 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 694 | 29.49 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 704 | 29.50 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 778 | 29.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 786 | 29.63 | temperature | 25 | 30 | < th | dose independent | sin | 1 | NA |
| 806 | 29.65 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 827 | 29.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 866 | 29.71 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 920 | 29.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 933 | 29.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 12 |
| 955 | 29.79 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 956 | 29.79 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 15 |
| 991 | 29.83 | temperature | 25 | 30 | > th | dose independent | sin | 1 | NA |