BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0175600 Os07g0175600|AK104966
(170 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0175600 Plant lipid transfer protein/Par allergen fami... 213 6e-56
Os07g0174900 Plant lipid transfer protein/Par allergen fami... 97 7e-21
Os07g0175000 Plant lipid transfer protein/Par allergen fami... 93 8e-20
Os03g0794000 Plant lipid transfer protein/Par allergen fami... 89 1e-18
Os03g0793800 Plant lipid transfer/seed storage/trypsin-alph... 89 1e-18
AK061537 89 1e-18
Os07g0174400 Plant lipid transfer protein/Par allergen fami... 84 6e-17
Os04g0462200 Plant lipid transfer/seed storage/trypsin-alph... 71 3e-13
Os03g0192600 Plant lipid transfer protein/Par allergen fami... 68 2e-12
Os05g0489200 Plant lipid transfer/seed storage/trypsin-alph... 66 2e-11
>Os07g0175600 Plant lipid transfer protein/Par allergen family protein
Length = 170
Score = 213 bits (542), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 112/130 (86%), Positives = 112/130 (86%)
Query: 27 QPPSSTSGCTQTLLSMSPCLNYLTGNETAPSASCCGKLGEVVKSQPECLCVALNADTAAL 86
QPPSSTSGCTQTLLSMSPCLNYLTGNETAPSASCCGKLGEVVKSQPECLCVALNADTAAL
Sbjct: 27 QPPSSTSGCTQTLLSMSPCLNYLTGNETAPSASCCGKLGEVVKSQPECLCVALNADTAAL 86
Query: 87 GLSINRTRALGLPDACKVQTPPVSNCKSXXXXXXXXXXXXXXXXXXSKATPATPVGSGVA 146
GLSINRTRALGLPDACKVQTPPVSNCKS SKATPATPVGSGVA
Sbjct: 87 GLSINRTRALGLPDACKVQTPPVSNCKSGAAAPPAGQTPTTPAGTGSKATPATPVGSGVA 146
Query: 147 PLRVSPVGIL 156
PLRVSPVGIL
Sbjct: 147 PLRVSPVGIL 156
>Os07g0174900 Plant lipid transfer protein/Par allergen family protein
Length = 171
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 59/80 (73%)
Query: 33 SGCTQTLLSMSPCLNYLTGNETAPSASCCGKLGEVVKSQPECLCVALNADTAALGLSINR 92
SGCT ++S++PCL+Y+ GN + P+ASCC L VVKS+PECLC L ++LG+++N
Sbjct: 29 SGCTSEMVSLAPCLDYMQGNASRPTASCCAALSSVVKSRPECLCAVLGGGASSLGVTVNT 88
Query: 93 TRALGLPDACKVQTPPVSNC 112
TRAL LP AC V+TPP S C
Sbjct: 89 TRALELPAACGVKTPPPSEC 108
>Os07g0175000 Plant lipid transfer protein/Par allergen family protein
Length = 181
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 56/83 (67%)
Query: 30 SSTSGCTQTLLSMSPCLNYLTGNETAPSASCCGKLGEVVKSQPECLCVALNADTAALGLS 89
S +GC+ ++++SPCL+Y++G P +CC L VV+S P CLC+ L+ A+ G+S
Sbjct: 32 SQNNGCSSVMMTLSPCLDYISGKSPIPEFTCCTTLAGVVQSDPRCLCMVLDGSAASFGIS 91
Query: 90 INRTRALGLPDACKVQTPPVSNC 112
IN TRAL LP CKVQ PP+S C
Sbjct: 92 INHTRALELPGVCKVQAPPISQC 114
>Os03g0794000 Plant lipid transfer protein/Par allergen family protein
Length = 189
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 33 SGCTQTLLSMSPCLNYLTGNETAPSASCCGKLGEVVKSQPECLCVALNADTAALGLSINR 92
SGC L+S+SPC+ Y++GN TAP+A+CC L V++S P CLC+ L A+LG++++
Sbjct: 45 SGCMPELVSLSPCMGYMSGNATAPAAACCSALSGVLRSSPRCLCMVLGGTAASLGVAVDT 104
Query: 93 TRALGLPDACKVQTPPVSNCKSXXXXXXXXXXXXXXXXXXSKATPATPVGS 143
RA LP AC VQ PP S C + S TPATP G+
Sbjct: 105 ARAALLPGACSVQAPPASQCNA-----AGVPVSSPANPTTSGGTPATPAGT 150
>Os03g0793800 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 177
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 30 SSTSGCTQTLLSMSPCLNYLTGNETAPSASCCGKLGEVVKSQPECLCVA--LNADTAALG 87
S+ +GCT L+++ PCLNY++GNET+P+ +CC +L VV+SQP+CLC A ++ ++ G
Sbjct: 27 SAQTGCTAALINLYPCLNYISGNETSPTRTCCSQLATVVQSQPQCLCAAISGDSSSSIGG 86
Query: 88 LSINRTRALGLPDACKVQTPPVSNCKS 114
++I++TRAL LP AC V TPP S C S
Sbjct: 87 VTIDKTRALELPKACNVVTPPASRCNS 113
>AK061537
Length = 177
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 30 SSTSGCTQTLLSMSPCLNYLTGNETAPSASCCGKLGEVVKSQPECLCVA--LNADTAALG 87
S+ +GCT L+++ PCLNY++GNET+P+ +CC +L VV+SQP+CLC A ++ ++ G
Sbjct: 27 SAQTGCTAALINLYPCLNYISGNETSPTRTCCSQLATVVQSQPQCLCAAISGDSSSSIGG 86
Query: 88 LSINRTRALGLPDACKVQTPPVSNCKS 114
++I++TRAL LP AC V TPP S C S
Sbjct: 87 VTIDKTRALELPKACNVVTPPASRCNS 113
>Os07g0174400 Plant lipid transfer protein/Par allergen family protein
Length = 131
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 35 CTQTLLSMSPCLNYLTGNETAPSASCCGKLGEVVKSQPECLCVALNADTAALGLSINRTR 94
C ++S++ CL Y++GN +AP SCC L VV S+P CLC L ++LG++IN TR
Sbjct: 39 CMTEIISLASCLGYMSGNSSAPKPSCCTALSSVVTSKPACLCAVLGGGASSLGVTINNTR 98
Query: 95 ALGLPDACKVQTPPVSNC 112
AL LP AC V+TPP S C
Sbjct: 99 ALELPAACNVKTPPASQC 116
>Os04g0462200 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 200
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 30 SSTSGCTQTLLSMSPCLNYLTGNETAPSASCCGKLGEVVKSQPECLCVAL--NADTAALG 87
SS SGC L+ + PCL ++ GN APS +CC LG +V +P CLC AL + A+
Sbjct: 34 SSGSGCNAGLIRLLPCLGFVGGNNAAPSNTCCANLGSMVHDEPLCLCQALSQSGGGGAIP 93
Query: 88 LSINRTRALGLPDACKVQTPPVS 110
+ +NRTRA+ LP C++ PP +
Sbjct: 94 VPVNRTRAVQLPLLCRLDLPPAA 116
>Os03g0192600 Plant lipid transfer protein/Par allergen family protein
Length = 211
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 35 CTQTLLSMSPCLNYLTGNETA--PSASCCGKLGEVVKSQPECLCVALNADTAALGLSINR 92
CT LLS++ CL+Y+ T P A CC L VVK + CLC A + G+++N
Sbjct: 53 CTDALLSLAGCLSYVQEGSTVAKPDAPCCSGLKGVVKKEVACLCQAFQG-SQNFGVTLNM 111
Query: 93 TRALGLPDACKVQTPPVSNCK 113
T+AL LP ACKV+TPP S C
Sbjct: 112 TKALQLPAACKVKTPPFSKCH 132
>Os05g0489200 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 210
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 35 CTQTLLSMSPCLNYLTGNETA--PSASCCGKLGEVVKSQPECLCVALNADTAALGLSINR 92
C LL+MS CL Y+ A P CC +L +V+S P CLC L+ + G++++
Sbjct: 52 CLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGDSYGIAVDY 111
Query: 93 TRALGLPDACKVQTPPVSNCKS 114
+RAL LP C+V TPPVS C +
Sbjct: 112 SRALALPAICRVSTPPVSTCAA 133
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,408,618
Number of extensions: 143434
Number of successful extensions: 328
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 12
Length of query: 170
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 76
Effective length of database: 12,127,685
Effective search space: 921704060
Effective search space used: 921704060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 152 (63.2 bits)