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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0794000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer protein/Par allergen family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.1 (0.0496) R2 : 0.241
β1 : -1.72 (0.185) R2dD : 0.164 R2D : 0.0997
β2 : 0.637 (0.123) R2dC : 0.0496 R2C : 0.0423
β3 : 1.2 (0.18) R2dE : 0.0812 R2E : 0.0359
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.151 (0.108) R2dN8 : 0.0056 R2N8 : 0.00227
σ : 0.925
deviance : 394.44
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_____
C
peak time of C : 3.14
E
wheather : radiation
threshold : 33.59
memory length : 38483
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
393.04 0.931 4.33 -2.83 0.689 0.866 -0.881 7.09 -0.601 3.88 0.1309 4370 -- --
407.88 0.941 4.11 -2.07 0.468 0.819 -1.67 -- -0.116 4.79 20.05 26123 -- --
394.51 0.925 4.33 -2.84 0.718 0.883 -- 6.95 -0.604 3.73 0.1199 4319 -- --
394.44 0.925 4.1 -1.72 0.637 1.2 -- -- -0.151 3.14 33.59 38483 -- --
419.39 0.954 4.33 -2.7 -- 0.957 -- 7.13 -0.563 -- 0.1383 4456 -- --
431.32 0.974 4.13 -1.55 0.687 -- -0.693 -- -0.314 3.8 -- -- -- --
432.71 0.974 4.13 -1.54 0.681 -- -- -- -0.31 3.67 -- -- -- --
415.71 0.95 4.12 -1.69 -- 1.36 -- -- -0.15 -- 18.16 38035 -- --
432.09 0.968 4.09 -- 0.729 1.42 -- -- 0.2 3.04 5.03 38580 -- --
458.42 1 4.13 -1.51 -- -- -- -- -0.292 -- -- -- -- --
495.18 1.04 4.09 -- 0.651 -- -- -- -0.138 3.69 -- -- -- --
427.86 0.963 3.98 -- -- 1.62 -- -- 0.445 -- 5.337 46622 -- --
518.66 1.06 4.09 -- -- -- -- -- -0.124 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 369.27 humidity 80 14400 > th dose dependent rect. 1 2
2 370.83 humidity 80 14400 > th dose dependent rect. 24 4
17 374.33 humidity 90 14400 > th dose independent rect. 1 2
18 375.16 humidity 90 14400 < th dose independent rect. 1 3
19 375.22 humidity 90 14400 > th dose independent rect. 24 6
23 375.84 humidity 90 14400 < th dose independent rect. 2 1
30 376.75 humidity 90 14400 < th dose independent rect. 23 6
46 379.11 humidity 90 43200 < th dose independent rect. 22 1
49 379.56 humidity 90 43200 < th dose independent rect. 20 3
52 379.68 humidity 90 14400 > th dose dependent rect. 4 2
63 380.29 radiation 1 43200 < th dose independent rect. 17 1
67 380.43 radiation 1 43200 < th dose independent rect. 17 8
73 380.46 radiation 1 43200 < th dose independent rect. 17 5
82 380.61 radiation 1 43200 > th dose independent rect. 17 1
86 380.95 humidity 80 43200 > th dose independent rect. 17 2
87 380.99 humidity 80 43200 > th dose dependent rect. 18 3
103 381.23 temperature 25 43200 > th dose dependent rect. 4 5
108 381.29 humidity 80 43200 > th dose dependent rect. 19 1
109 381.31 temperature 25 43200 < th dose independent rect. 6 1
118 381.41 temperature 25 43200 > th dose independent rect. 6 1
122 381.44 temperature 30 43200 > th dose independent sin 7 NA
129 381.47 temperature 30 43200 > th dose independent rect. 8 3
147 381.53 temperature 30 43200 > th dose independent rect. 8 8
159 381.53 temperature 30 43200 > th dose independent rect. 15 20
161 381.53 temperature 30 43200 < th dose independent rect. 15 20
180 381.56 temperature 30 43200 < th dose independent sin 7 NA
183 381.56 temperature 30 43200 > th dose dependent rect. 10 1
184 381.57 temperature 30 43200 < th dose independent sin 9 NA
189 381.58 temperature 30 43200 > th dose dependent sin 7 NA
192 381.59 radiation 1 43200 < th dose independent rect. 17 16
213 381.61 temperature 30 43200 > th dose dependent rect. 8 7
227 381.62 temperature 30 43200 < th dose independent rect. 5 11
228 381.62 temperature 30 43200 < th dose independent rect. 22 18
244 381.63 temperature 30 43200 < th dose independent rect. 8 8
254 381.63 temperature 30 43200 < th dose independent rect. 22 13
277 381.64 temperature 30 43200 < th dose independent rect. 8 3
278 381.64 temperature 30 43200 < th dose independent rect. 5 6
279 381.64 temperature 30 43200 < th dose independent rect. 3 8
280 381.64 temperature 30 43200 < th dose independent rect. 24 11
283 381.64 temperature 30 43200 > th dose independent rect. 17 18
354 381.70 temperature 30 43200 > th dose dependent rect. 13 1
364 381.72 temperature 30 43200 < th dose independent rect. 17 18
367 381.73 temperature 30 43200 < th dose independent rect. 10 1
370 381.75 temperature 30 43200 > th dose independent rect. 10 1
390 381.75 temperature 30 43200 > th dose dependent rect. 12 3
550 381.86 temperature 30 43200 > th dose independent no NA NA
642 381.86 temperature 30 43200 > th dose dependent no NA NA
763 381.89 temperature 30 43200 > th dose dependent rect. 12 23
778 381.90 temperature 30 43200 < th dose independent rect. 5 20
786 381.91 temperature 30 43200 < th dose independent no NA NA
809 381.91 radiation 1 43200 > th dose independent rect. 17 16