BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0794000 Os03g0794000|AK108123
(189 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0794000 Plant lipid transfer protein/Par allergen fami... 214 4e-56
Os07g0174900 Plant lipid transfer protein/Par allergen fami... 92 2e-19
Os07g0175000 Plant lipid transfer protein/Par allergen fami... 86 2e-17
Os07g0174400 Plant lipid transfer protein/Par allergen fami... 84 4e-17
Os07g0175600 Plant lipid transfer protein/Par allergen fami... 71 4e-13
Os03g0793800 Plant lipid transfer/seed storage/trypsin-alph... 65 2e-11
AK061537 65 2e-11
>Os03g0794000 Plant lipid transfer protein/Par allergen family protein
Length = 189
Score = 214 bits (544), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/189 (64%), Positives = 121/189 (64%)
Query: 1 MGAGRGSNGAVLGIGVAVVTXXXXXXXXXXXXXXXXXXSTDGGGSGCMPELVSLSPCMGY 60
MGAGRGSNGAVLGIGVAVVT STDGGGSGCMPELVSLSPCMGY
Sbjct: 1 MGAGRGSNGAVLGIGVAVVTALLAWRCAAAAAQAPPVASTDGGGSGCMPELVSLSPCMGY 60
Query: 61 MSGNXXXXXXXXXXXLSGVLRSSPRCLCMVLGGTAASLGVAVDTARAALLPGACSVQAPP 120
MSGN LSGVLRSSPRCLCMVLGGTAASLGVAVDTARAALLPGACSVQAPP
Sbjct: 61 MSGNATAPAAACCSALSGVLRSSPRCLCMVLGGTAASLGVAVDTARAALLPGACSVQAPP 120
Query: 121 ASQCNAAGVPVXXXXXXXXXXXXXXXXXXXXXXXXXXXSTTQYSDGSVNRSRXXXXXXXX 180
ASQCNAAGVPV STTQYSDGSVNRSR
Sbjct: 121 ASQCNAAGVPVSSPANPTTSGGTPATPAGTPGSKTTPASTTQYSDGSVNRSRVILVILVA 180
Query: 181 XXXXFLDHF 189
FLDHF
Sbjct: 181 AIVVFLDHF 189
>Os07g0174900 Plant lipid transfer protein/Par allergen family protein
Length = 171
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 56/87 (64%)
Query: 45 SGCMPELVSLSPCMGYMSGNXXXXXXXXXXXLSGVLRSSPRCLCMVLGGTAASLGVAVDT 104
SGC E+VSL+PC+ YM GN LS V++S P CLC VLGG A+SLGV V+T
Sbjct: 29 SGCTSEMVSLAPCLDYMQGNASRPTASCCAALSSVVKSRPECLCAVLGGGASSLGVTVNT 88
Query: 105 ARAALLPGACSVQAPPASQCNAAGVPV 131
RA LP AC V+ PP S+C+ G P+
Sbjct: 89 TRALELPAACGVKTPPPSECSKVGAPI 115
>Os07g0175000 Plant lipid transfer protein/Par allergen family protein
Length = 181
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%)
Query: 44 GSGCMPELVSLSPCMGYMSGNXXXXXXXXXXXLSGVLRSSPRCLCMVLGGTAASLGVAVD 103
+GC +++LSPC+ Y+SG L+GV++S PRCLCMVL G+AAS G++++
Sbjct: 34 NNGCSSVMMTLSPCLDYISGKSPIPEFTCCTTLAGVVQSDPRCLCMVLDGSAASFGISIN 93
Query: 104 TARAALLPGACSVQAPPASQC 124
RA LPG C VQAPP SQC
Sbjct: 94 HTRALELPGVCKVQAPPISQC 114
>Os07g0174400 Plant lipid transfer protein/Par allergen family protein
Length = 131
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%)
Query: 47 CMPELVSLSPCMGYMSGNXXXXXXXXXXXLSGVLRSSPRCLCMVLGGTAASLGVAVDTAR 106
CM E++SL+ C+GYMSGN LS V+ S P CLC VLGG A+SLGV ++ R
Sbjct: 39 CMTEIISLASCLGYMSGNSSAPKPSCCTALSSVVTSKPACLCAVLGGGASSLGVTINNTR 98
Query: 107 AALLPGACSVQAPPASQC 124
A LP AC+V+ PPASQC
Sbjct: 99 ALELPAACNVKTPPASQC 116
>Os07g0175600 Plant lipid transfer protein/Par allergen family protein
Length = 170
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 45 SGCMPELVSLSPCMGYMSGNXXXXXXXXXXXLSGVLRSSPRCLCMVLGGTAASLGVAVDT 104
SGC L+S+SPC+ Y++GN L V++S P CLC+ L A+LG++++
Sbjct: 33 SGCTQTLLSMSPCLNYLTGNETAPSASCCGKLGEVVKSQPECLCVALNADTAALGLSINR 92
Query: 105 ARAALLPGACSVQAPPASQCNA 126
RA LP AC VQ PP S C +
Sbjct: 93 TRALGLPDACKVQTPPVSNCKS 114
>Os03g0793800 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 177
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 45 SGCMPELVSLSPCMGYMSGNXXXXXXXXXXXLSGVLRSSPRCLCMV--LGGTAASLGVAV 102
+GC L++L PC+ Y+SGN L+ V++S P+CLC +++ GV +
Sbjct: 30 TGCTAALINLYPCLNYISGNETSPTRTCCSQLATVVQSQPQCLCAAISGDSSSSIGGVTI 89
Query: 103 DTARAALLPGACSVQAPPASQCNAAG 128
D RA LP AC+V PPAS+CN+AG
Sbjct: 90 DKTRALELPKACNVVTPPASRCNSAG 115
>AK061537
Length = 177
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 45 SGCMPELVSLSPCMGYMSGNXXXXXXXXXXXLSGVLRSSPRCLCMV--LGGTAASLGVAV 102
+GC L++L PC+ Y+SGN L+ V++S P+CLC +++ GV +
Sbjct: 30 TGCTAALINLYPCLNYISGNETSPTRTCCSQLATVVQSQPQCLCAAISGDSSSSIGGVTI 89
Query: 103 DTARAALLPGACSVQAPPASQCNAAG 128
D RA LP AC+V PPAS+CN+AG
Sbjct: 90 DKTRALELPKACNVVTPPASRCNSAG 115
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,753,341
Number of extensions: 153057
Number of successful extensions: 406
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 8
Length of query: 189
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,075,471
Effective search space: 1135094274
Effective search space used: 1135094274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)