Os07g0174900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant lipid transfer protein/Par allergen family protein.
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Os07g0174900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant lipid transfer protein/Par allergen family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.05 | 0.616 | 5.65 | 0.108 | 1.01 | 1.32 | 0.558 | 2.56 | -0.175 | 10 | 21.9 | 993 | -- | -- |
| 185.56 | 0.634 | 5.58 | 0.903 | 0.953 | 1.25 | 1.28 | -- | 0.0193 | 10.4 | 22 | 743 | -- | -- |
| 172.39 | 0.612 | 5.66 | 0.0767 | 0.977 | 1.3 | -- | 2.64 | -0.193 | 10 | 21.91 | 877 | -- | -- |
| 192.02 | 0.645 | 5.58 | 0.873 | 0.964 | 1.22 | -- | -- | -0.00708 | 10.3 | 22 | 730 | -- | -- |
| 225.14 | 0.699 | 5.66 | 0.0995 | -- | 1.56 | -- | 2.66 | -0.127 | -- | 21.9 | 855 | -- | -- |
| 248.24 | 0.739 | 5.66 | 0.411 | 1.21 | -- | 1.25 | -- | -0.394 | 10.3 | -- | -- | -- | -- |
| 254.52 | 0.747 | 5.66 | 0.46 | 1.21 | -- | -- | -- | -0.391 | 10.2 | -- | -- | -- | -- |
| 245.1 | 0.729 | 5.58 | 0.956 | -- | 1.5 | -- | -- | 0.0814 | -- | 21.93 | 789 | -- | -- |
| 210.35 | 0.676 | 5.6 | -- | 1.03 | 1.05 | -- | -- | -0.0902 | 9.99 | 22.2 | 852 | -- | -- |
| 342.72 | 0.865 | 5.69 | 0.442 | -- | -- | -- | -- | -0.394 | -- | -- | -- | -- | -- |
| 260.09 | 0.754 | 5.67 | -- | 1.2 | -- | -- | -- | -0.442 | 10.2 | -- | -- | -- | -- |
| 266.75 | 0.761 | 5.61 | -- | -- | 1.28 | -- | -- | -0.0574 | -- | 22.29 | 817 | -- | -- |
| 347.88 | 0.871 | 5.7 | -- | -- | -- | -- | -- | -0.443 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.00 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 2 | 177.95 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 6 | 179.34 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 9 | 180.02 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 16 | 180.92 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 22 | 181.52 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 18 |
| 24 | 181.65 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 27 | 181.80 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 51 | 182.65 | wind | 3 | 14400 | < th | dose dependent | sin | 10 | NA |
| 53 | 182.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 58 | 182.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 103 | 183.67 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 106 | 183.71 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 123 | 184.00 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 140 | 184.21 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 13 |
| 206 | 185.05 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 7 |
| 208 | 185.07 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 217 | 185.17 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 219 | 185.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 229 | 185.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 241 | 185.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 247 | 185.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 319 | 186.55 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 321 | 186.59 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 337 | 186.75 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 349 | 186.91 | wind | 3 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 357 | 187.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 359 | 187.05 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 380 | 187.24 | wind | 3 | 14400 | < th | dose independent | sin | 5 | NA |
| 393 | 187.36 | wind | 3 | 14400 | < th | dose dependent | rect. | 12 | 20 |
| 394 | 187.36 | wind | 3 | 14400 | < th | dose dependent | rect. | 10 | 22 |
| 439 | 187.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 440 | 187.91 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 452 | 188.06 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 455 | 188.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 475 | 188.25 | wind | 3 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 488 | 188.35 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 496 | 188.41 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 532 | 188.72 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 538 | 188.79 | wind | 3 | 14400 | > th | dose independent | sin | 5 | NA |
| 611 | 189.29 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 654 | 189.54 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 659 | 189.57 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 680 | 189.67 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 688 | 189.74 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 695 | 189.82 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 770 | 190.27 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 774 | 190.27 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 803 | 190.42 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 861 | 190.68 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 867 | 190.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 910 | 190.92 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 915 | 190.96 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 928 | 191.03 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 931 | 191.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 998 | 191.33 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 20 |