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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0174400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer protein/Par allergen family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0227) R2 : 0.00846
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0941 (0.0477) R2dN8 : 0.0109 R2N8 : 0.00846
σ : 0.427
deviance : 83.55
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.26 0.413 3.11 1.26 0.219 -0.825 -0.301 6.8 0.196 5.96 28.8 1684 -- --
79.61 0.416 3.24 0.132 0.241 -0.069 -0.331 -- 0.106 5.85 25.7 2063 -- --
77.37 0.41 3.1 1.3 0.209 -0.867 -- 7.17 0.221 6.02 28.6 1813 -- --
79.7 0.416 3.24 0.122 0.243 -0.0815 -- -- 0.0867 5.86 33.4 1392 -- --
79.35 0.415 3.1 1.38 -- -0.897 -- 7.29 0.259 -- 28.3 2062 -- --
79.76 0.419 3.24 0.111 0.25 -- -0.32 -- 0.1 5.98 -- -- -- --
80.01 0.419 3.24 0.109 0.248 -- -- -- 0.101 6.07 -- -- -- --
82.94 0.424 3.25 0.133 -- -0.074 -- -- 0.0946 -- 33.9 1969 -- --
80.03 0.417 3.25 -- 0.252 -0.0812 -- -- 0.0756 5.9 33.4 1071 -- --
83.2 0.426 3.24 0.116 -- -- -- -- 0.107 -- -- -- -- --
80.32 0.419 3.24 -- 0.25 -- -- -- 0.0892 6.04 -- -- -- --
83.34 0.425 3.25 -- -- -0.0668 -- -- 0.0822 -- 33.35 1058 -- --
83.55 0.427 3.25 -- -- -- -- -- 0.0941 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.24 temperature 25.0 90 > th dose independent rect. 1 3
2 71.33 temperature 25.0 90 > th dose dependent rect. 2 2
3 71.35 atmosphere 1005.0 10 > th dose dependent rect. 2 3
4 71.36 temperature 25.0 270 > th dose independent rect. 1 1
6 71.69 temperature 25.0 90 > th dose dependent rect. 1 4
13 72.21 precipitation 0.1 10 < th dose independent rect. 3 23
14 72.21 precipitation 0.1 10 < th dose dependent rect. 3 23
16 72.31 atmosphere 1000.0 30 > th dose independent rect. 3 23
22 72.59 atmosphere 1005.0 270 > th dose dependent rect. 1 2
34 73.17 atmosphere 1010.0 30 < th dose dependent rect. 2 1
37 73.25 wind 1.0 30 < th dose dependent rect. 2 1
39 73.29 radiation 1.0 43200 < th dose dependent rect. 3 1
40 73.33 humidity 90.0 10 > th dose independent rect. 2 1
41 73.34 wind 5.0 10 < th dose independent rect. 2 1
43 73.34 wind 5.0 10 < th dose dependent rect. 2 1
46 73.35 humidity 90.0 30 > th dose dependent rect. 2 1
49 73.37 wind 1.0 10 < th dose independent rect. 2 1
55 73.39 humidity 50.0 10 > th dose dependent rect. 2 1
61 73.41 temperature 10.0 10 > th dose independent rect. 2 1
63 73.41 temperature 30.0 10 < th dose independent rect. 2 1
64 73.41 humidity 50.0 10 > th dose independent rect. 2 1
67 73.41 atmosphere 995.0 10 > th dose independent rect. 2 1
68 73.41 atmosphere 1010.0 10 < th dose independent rect. 2 1
70 73.41 radiation 1.0 10 < th dose independent rect. 2 1
75 73.41 precipitation 0.1 10 < th dose independent rect. 2 1
78 73.41 temperature 10.0 10 > th dose independent rect. 3 23
79 73.41 temperature 30.0 30 < th dose dependent rect. 2 1
82 73.41 radiation 1.0 10 < th dose dependent rect. 2 1
87 73.41 precipitation 0.1 10 < th dose dependent rect. 2 1
91 73.42 temperature 10.0 10 > th dose dependent rect. 2 1
136 73.48 atmosphere 995.0 30 > th dose dependent rect. 2 1
138 73.49 wind 1.0 30 > th dose independent rect. 2 1
155 73.71 radiation 1.0 4320 < th dose dependent rect. 3 1
156 73.72 wind 9.0 30 < th dose independent rect. 3 23
160 73.76 wind 9.0 1440 < th dose independent rect. 3 1
161 73.76 temperature 10.0 1440 > th dose independent rect. 3 1
164 73.76 temperature 30.0 1440 < th dose independent rect. 3 1
168 73.76 humidity 50.0 1440 > th dose independent rect. 3 1
177 73.76 atmosphere 995.0 1440 > th dose independent rect. 3 1
178 73.76 radiation 1.0 1440 < th dose independent rect. 3 1
198 73.76 temperature 10.0 1440 > th dose independent rect. 4 23
229 74.36 humidity 50.0 30 > th dose independent rect. 3 23
240 74.81 temperature 25.0 1440 < th dose independent rect. 1 1
250 74.94 humidity 90.0 270 < th dose independent rect. 1 1
269 75.18 humidity 80.0 4320 < th dose dependent rect. 1 1
288 75.42 wind 1.0 10 < th dose independent rect. 13 14
300 75.49 wind 1.0 10 < th dose independent rect. 17 10
302 75.51 wind 1.0 10 < th dose independent rect. 21 6
318 75.62 atmosphere 1000.0 10 > th dose independent rect. 5 21
350 75.69 atmosphere 1005.0 10 > th dose independent rect. 2 3
362 75.78 wind 1.0 10 < th dose independent rect. 6 21
367 75.87 humidity 90.0 90 < th dose independent rect. 2 3
368 75.89 wind 1.0 10 < th dose independent rect. 8 19
384 76.04 atmosphere 995.0 720 > th dose independent rect. 23 16
449 76.24 temperature 25.0 720 > th dose dependent rect. 5 4
457 76.27 humidity 80.0 4320 < th dose independent rect. 1 1
477 76.36 temperature 25.0 30 > th dose independent rect. 4 1
481 76.39 humidity 90.0 10 < th dose independent rect. 3 2
493 76.43 temperature 30.0 30 < th dose independent rect. 3 23
503 76.46 temperature 25.0 30 > th dose dependent rect. 16 19
504 76.46 atmosphere 995.0 10 > th dose dependent rect. 5 21
510 76.49 atmosphere 1015.0 30 < th dose independent rect. 3 23
513 76.50 wind 1.0 30 > th dose dependent rect. 4 1
528 76.53 atmosphere 995.0 30 > th dose dependent rect. 3 23
548 76.58 temperature 25.0 90 > th dose dependent rect. 4 1
563 76.62 wind 1.0 30 < th dose dependent rect. 17 10
571 76.64 wind 1.0 30 < th dose dependent rect. 21 6
575 76.64 wind 9.0 30 < th dose dependent rect. 3 23
578 76.65 wind 3.0 30 < th dose dependent rect. 2 6
579 76.65 wind 1.0 30 < th dose dependent rect. 13 14
580 76.66 humidity 80.0 4320 > th dose independent rect. 1 1
595 76.69 temperature 25.0 30 > th dose dependent sin 10 NA
618 76.74 precipitation 0.1 10 < th dose independent rect. 2 3
620 76.74 temperature 10.0 720 > th dose independent rect. 15 8
621 76.74 temperature 10.0 720 > th dose independent rect. 23 16
623 76.74 precipitation 0.1 10 < th dose dependent rect. 2 3
632 76.77 atmosphere 995.0 720 > th dose independent rect. 7 8
633 76.78 temperature 25.0 720 > th dose independent rect. 5 4
634 76.78 atmosphere 1000.0 10 > th dose independent rect. 8 18
635 76.78 wind 5.0 14400 < th dose dependent rect. 11 1
646 76.80 radiation 1.0 10 < th dose dependent rect. 2 14
657 76.82 humidity 80.0 14400 < th dose dependent rect. 1 8
669 76.84 temperature 10.0 30 > th dose dependent rect. 3 23
678 76.86 precipitation 0.1 10 < th dose independent rect. 5 21
683 76.86 precipitation 0.1 10 < th dose dependent rect. 5 21
690 76.88 temperature 10.0 10 > th dose independent rect. 2 3
692 76.88 temperature 30.0 10 < th dose independent rect. 2 3
693 76.88 humidity 50.0 10 > th dose independent rect. 2 3
697 76.88 atmosphere 1010.0 10 < th dose independent rect. 2 3
699 76.88 radiation 1.0 10 < th dose independent rect. 2 3
705 76.88 temperature 10.0 10 > th dose independent rect. 5 21
707 76.88 radiation 20.0 10 < th dose dependent rect. 2 3
713 76.89 atmosphere 1000.0 10 > th dose independent rect. 16 10
718 76.89 radiation 1.0 10 < th dose dependent rect. 2 12
726 76.90 wind 1.0 14400 > th dose dependent rect. 11 1
730 76.91 wind 3.0 14400 > th dose independent rect. 10 2
742 76.92 wind 9.0 10 < th dose independent rect. 5 21
747 76.93 temperature 10.0 720 > th dose independent rect. 3 8
748 76.93 atmosphere 995.0 720 > th dose independent rect. 3 8
751 76.93 temperature 10.0 720 > th dose independent rect. 11 16
758 76.94 humidity 50.0 30 > th dose independent rect. 5 21
763 76.95 radiation 1.0 10 < th dose independent rect. 2 14
765 76.95 temperature 30.0 720 < th dose independent rect. 1 22
807 76.98 temperature 10.0 10 > th dose dependent rect. 5 21
810 76.99 humidity 90.0 10 < th dose dependent rect. 4 1
821 77.01 temperature 30.0 720 < th dose independent rect. 1 20
831 77.02 radiation 1.0 10 < th dose independent rect. 2 12
855 77.05 wind 3.0 14400 < th dose independent rect. 10 2
864 77.06 temperature 25.0 30 > th dose dependent rect. 21 14
865 77.07 temperature 25.0 720 > th dose independent rect. 8 1
867 77.07 wind 9.0 720 < th dose independent rect. 3 8
868 77.07 temperature 30.0 1440 < th dose independent rect. 14 21
873 77.07 temperature 25.0 90 > th dose dependent rect. 14 21
888 77.09 temperature 25.0 720 > th dose dependent rect. 5 10
892 77.10 temperature 30.0 720 < th dose independent rect. 9 9
901 77.11 temperature 30.0 1440 > th dose independent rect. 14 21
903 77.11 wind 1.0 10 > th dose independent rect. 5 23
921 77.12 temperature 25.0 30 > th dose dependent rect. 24 11
956 77.16 temperature 30.0 720 < th dose independent rect. 6 15
966 77.17 temperature 30.0 720 > th dose independent rect. 13 2
972 77.17 temperature 30.0 720 < th dose independent rect. 15 16
987 77.19 humidity 50.0 720 > th dose independent rect. 3 8
988 77.19 atmosphere 1000.0 10 > th dose independent rect. 14 12