BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0794000 Os03g0794000|AK108123
(189 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22600.1 | chr3:8006711-8007397 REVERSE LENGTH=171 75 2e-14
AT2G48130.1 | chr2:19685263-19685977 REVERSE LENGTH=184 72 2e-13
AT4G14815.1 | chr4:8505122-8505760 FORWARD LENGTH=157 67 8e-12
AT3G43720.1 | chr3:15615549-15617099 REVERSE LENGTH=194 60 7e-10
AT1G03103.1 | chr1:747219-747955 FORWARD LENGTH=172 58 4e-09
AT5G09370.1 | chr5:2909450-2910475 REVERSE LENGTH=159 50 9e-07
AT1G55260.1 | chr1:20614663-20616158 FORWARD LENGTH=228 49 1e-06
AT2G27130.1 | chr2:11595379-11596395 FORWARD LENGTH=177 47 6e-06
>AT3G22600.1 | chr3:8006711-8007397 REVERSE LENGTH=171
Length = 170
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%)
Query: 45 SGCMPELVSLSPCMGYMSGNXXXXXXXXXXXLSGVLRSSPRCLCMVLGGTAASLGVAVDT 104
S C L+S+SPC+ Y++GN LS V++SSP CLC VL G + LG+ V+
Sbjct: 26 SSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVVQSSPDCLCQVLNGGGSQLGINVNQ 85
Query: 105 ARAALLPGACSVQAPPASQCN 125
+A LP AC+VQ PP S+CN
Sbjct: 86 TQALGLPRACNVQTPPVSRCN 106
>AT2G48130.1 | chr2:19685263-19685977 REVERSE LENGTH=184
Length = 183
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 45 SGCMPELVSLSPCMGYMSGNXXXXXXXXXXXLSGVLRSSPRCLCMVLGGTAASLGVAVDT 104
S C+ L +LSPC+ Y++GN L V++SSP+C+C + ++G+ ++
Sbjct: 28 SSCVSTLTTLSPCLSYITGNSTTPSQPCCSRLDSVIKSSPQCICSAVNSPIPNIGLNINR 87
Query: 105 ARAALLPGACSVQAPPASQCNAA 127
+A LP AC++Q PP +QCNAA
Sbjct: 88 TQALQLPNACNIQTPPLTQCNAA 110
>AT4G14815.1 | chr4:8505122-8505760 FORWARD LENGTH=157
Length = 156
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%)
Query: 39 STDGGGSGCMPELVSLSPCMGYMSGNXXXXXXXXXXXLSGVLRSSPRCLCMVLGGTAASL 98
S S C L+S++PC+ +++ N L+ V+R S CLC VL G + L
Sbjct: 18 SIVSAQSSCTNVLISMAPCLSFITQNTSLPSQQCCNQLAHVVRYSSECLCQVLDGGGSQL 77
Query: 99 GVAVDTARAALLPGACSVQAPPASQCNA 126
G+ V+ +A LP AC V+ PPAS+C++
Sbjct: 78 GINVNETQALALPKACHVETPPASRCHS 105
>AT3G43720.1 | chr3:15615549-15617099 REVERSE LENGTH=194
Length = 193
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 43 GGSGCMPELVSLSPCMGYMS----GNXXXXXXXXXXXLSGVLRSSPRCLCMVLGGT-AAS 97
G CM L++++ C+ Y++ G L+G++ SSP+CLC +L G AA
Sbjct: 34 GAPDCMANLMNMTGCLSYVTVGEGGGAAKPDKTCCPALAGLVESSPQCLCYLLSGDMAAQ 93
Query: 98 LGVAVDTARAALLPGACSVQAPPASQCNAAGVPV 131
LG+ +D A+A LPG C V P S C+ G+PV
Sbjct: 94 LGIKIDKAKALKLPGVCGVITPDPSLCSLFGIPV 127
>AT1G03103.1 | chr1:747219-747955 FORWARD LENGTH=172
Length = 171
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 46 GCMPELVSLSPCMGYMSGNXXXXXXXXXXXLSGVLRSSPRCLCMVLGGTAASL-GVAVDT 104
GC L SLSPC+ Y++G S V++SSP CLC V+ +S G +
Sbjct: 24 GCRDTLTSLSPCLYYLNGGSSSPSWSCCRQFSTVVQSSPECLCSVVNSNESSFYGFKFNR 83
Query: 105 ARAALLPGACSVQAPPASQCNAAG 128
A LP AC+VQ P S CN G
Sbjct: 84 TLALNLPTACNVQTPSPSLCNTGG 107
>AT5G09370.1 | chr5:2909450-2910475 REVERSE LENGTH=159
Length = 158
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 43 GGSGCMPELVSLSPCMGYMS--GNXXXXXXXXXXXLSGVLRSSPRCLCMVLGGTAASLGV 100
G S C +++L PC+ ++S G L +L + P CLC G A LG+
Sbjct: 24 GASDCDTLVITLFPCLPFISIGGTADTPTASCCSSLKNILDTKPICLCE--GLKKAPLGI 81
Query: 101 AVDTARAALLPGACSVQAPPASQCNA 126
++ ++A LP AC + APP S C++
Sbjct: 82 KLNVTKSATLPVACKLNAPPVSACDS 107
>AT1G55260.1 | chr1:20614663-20616158 FORWARD LENGTH=228
Length = 227
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 45 SGCMPELVSLSPCMGYMSGNXXXXXXXXXXXLSGVLRSSPRCLC-MVLGGTAASLGVAVD 103
C +L+ LS C+ Y+ G+ V+R S +C+C +V LG+ ++
Sbjct: 74 EECTNQLIELSTCIPYVGGDAKAPTKDCCAGFGQVIRKSEKCVCILVRDKDDPQLGIKIN 133
Query: 104 TARAALLPGACSVQAPPASQC 124
AA LP AC + AP + C
Sbjct: 134 ATLAAHLPSACHITAPNITDC 154
>AT2G27130.1 | chr2:11595379-11596395 FORWARD LENGTH=177
Length = 176
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 41 DGGGS--GCMPELVSLSPCMGYMS--GNXXXXXXXXXXXLSGVLRSSPRCLCMVLGGTAA 96
DG S C+ ++++S C Y+ N L+G+++SSP C+C + GG A+
Sbjct: 32 DGPSSPVNCLVSMLNVSDCFSYVQVGSNEIKPEAACCPELAGMVQSSPECVCNLYGGGAS 91
Query: 97 S-LGVAVDTARAALLPGACSVQAPPASQCNAAGVP 130
GV +D RA L C V+AP S C+ G P
Sbjct: 92 PRFGVKLDKQRAEQLSTICGVKAPSPSLCSVLGFP 126
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,562,103
Number of extensions: 68953
Number of successful extensions: 133
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 9
Length of query: 189
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 96
Effective length of database: 8,556,881
Effective search space: 821460576
Effective search space used: 821460576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)