FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0489200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.27 (0.0281) R2 : 0.61
β1 : -1.44 (0.104) R2dD : 0.179 R2D : 0.0644
β2 : 1.44 (0.0688) R2dC : 0.379 R2C : 0.288
β3 : 1.01 (0.108) R2dE : 0.078 R2E : -0.0275
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.667 (0.0599) R2dN8 : 0.145 R2N8 : 0.0775
σ : 0.523
deviance : 126.26
__
_____
C
peak time of C : 10
E
wheather : humidity
threshold : 79
memory length : 1268
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.24 0.509 9.39 -1.52 1.42 6.86 -0.0673 -17 -0.665 9.73 48.48 642 -- --
134.12 0.539 9.29 -1.53 1.4 0.688 0.52 -- -0.665 9.56 63.84 2507 -- --
117.25 0.504 9.39 -1.53 1.42 6.85 -- -16.9 -0.666 9.73 48.48 641 -- --
126.26 0.523 9.27 -1.44 1.44 1.01 -- -- -0.667 10 79 1268 -- --
230.37 0.707 9.43 -1.46 -- 6.38 -- -17 -0.691 -- 47.56 625 -- --
148.38 0.571 9.29 -1.29 1.33 -- 0.281 -- -0.719 9.69 -- -- -- --
148.68 0.571 9.29 -1.28 1.32 -- -- -- -0.718 9.71 -- -- -- --
232.21 0.71 9.32 -1.47 -- 0.945 -- -- -0.699 -- 82.16 1508 -- --
178.07 0.622 9.26 -- 1.41 0.839 -- -- -0.6 10.1 120.7 1257 -- --
252.93 0.743 9.32 -1.29 -- -- -- -- -0.716 -- -- -- -- --
191.93 0.648 9.25 -- 1.33 -- -- -- -0.575 9.78 -- -- -- --
276.36 0.777 9.29 -- -- 0.854 -- -- -0.569 -- 92 1518 -- --
297.04 0.804 9.29 -- -- -- -- -- -0.573 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 111.23 humidity 50 4320 > th dose independent rect. 14 2
2 113.51 humidity 70 1440 < th dose dependent rect. 19 12
4 113.87 humidity 70 1440 < th dose dependent rect. 19 1
16 114.86 humidity 50 4320 > th dose independent rect. 17 14
17 114.98 humidity 50 4320 > th dose independent rect. 17 12
22 115.36 humidity 50 4320 < th dose dependent rect. 17 18
24 115.44 humidity 50 4320 < th dose independent rect. 17 17
25 115.46 humidity 50 4320 > th dose independent rect. 17 16
27 115.53 humidity 50 4320 < th dose dependent rect. 15 1
43 115.64 humidity 50 4320 < th dose independent rect. 17 1
60 115.65 humidity 50 4320 > th dose independent rect. 17 1
62 115.67 humidity 50 4320 < th dose dependent rect. 17 1
101 115.88 humidity 60 1440 > th dose independent rect. 18 4
133 116.16 humidity 50 4320 < th dose dependent rect. 17 23
432 117.43 humidity 60 720 > th dose independent rect. 7 20
454 117.53 humidity 50 1440 > th dose independent rect. 17 22
556 118.44 humidity 50 720 < th dose dependent sin 6 NA
613 119.16 humidity 50 1440 < th dose independent rect. 17 22
654 119.46 humidity 50 720 < th dose independent rect. 12 1
672 119.48 humidity 50 4320 < th dose independent rect. 14 2
673 119.54 humidity 80 720 < th dose dependent rect. 12 1
677 119.78 humidity 50 720 < th dose independent rect. 12 4
716 120.04 humidity 50 1440 > th dose independent rect. 1 15
717 120.06 humidity 50 720 < th dose independent rect. 14 2
736 120.12 humidity 70 720 < th dose dependent sin 12 NA
743 120.28 humidity 50 1440 > th dose independent rect. 23 17
750 120.38 humidity 50 1440 > th dose independent rect. 21 19
751 120.39 humidity 50 1440 > th dose independent rect. 19 21
755 120.43 humidity 50 720 < th dose independent sin 8 NA
784 120.58 humidity 50 1440 > th dose independent sin 8 NA
804 120.67 humidity 60 720 < th dose independent sin 11 NA
812 120.83 humidity 50 1440 > th dose independent rect. 6 10
818 120.90 humidity 70 1440 > th dose independent sin 12 NA
837 121.23 humidity 60 720 > th dose independent rect. 13 6
903 121.55 radiation 30 1440 > th dose dependent rect. 15 18
906 121.61 humidity 60 720 > th dose independent rect. 15 20