BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0489200 Os05g0489200|AK069135
(210 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G43720.1 | chr3:15615549-15617099 REVERSE LENGTH=194 88 3e-18
AT2G27130.1 | chr2:11595379-11596395 FORWARD LENGTH=177 85 3e-17
AT3G22600.1 | chr3:8006711-8007397 REVERSE LENGTH=171 78 3e-15
AT2G13820.1 | chr2:5774295-5776279 REVERSE LENGTH=170 74 4e-14
AT4G14815.1 | chr4:8505122-8505760 FORWARD LENGTH=157 69 2e-12
AT5G64080.1 | chr5:25645475-25646638 REVERSE LENGTH=183 65 2e-11
AT2G48130.1 | chr2:19685263-19685977 REVERSE LENGTH=184 62 3e-10
AT4G08670.1 | chr4:5536765-5538210 REVERSE LENGTH=209 60 6e-10
AT5G09370.1 | chr5:2909450-2910475 REVERSE LENGTH=159 58 4e-09
AT1G03103.1 | chr1:747219-747955 FORWARD LENGTH=172 54 7e-08
AT2G44300.1 | chr2:18307468-18308286 REVERSE LENGTH=205 53 1e-07
AT2G44290.1 | chr2:18305418-18306202 REVERSE LENGTH=206 52 2e-07
AT1G36150.1 | chr1:13528257-13529470 FORWARD LENGTH=257 51 4e-07
AT1G55260.1 | chr1:20614663-20616158 FORWARD LENGTH=228 50 1e-06
>AT3G43720.1 | chr3:15615549-15617099 REVERSE LENGTH=194
Length = 193
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
Query: 52 CLTALLNMSDCLTYVQ--NGSRARRPDKPCCPELAGLVESNPVCLCELLSG-AGDSYGIA 108
C+ L+NM+ CL+YV G A +PDK CCP LAGLVES+P CLC LLSG GI
Sbjct: 38 CMANLMNMTGCLSYVTVGEGGGAAKPDKTCCPALAGLVESSPQCLCYLLSGDMAAQLGIK 97
Query: 109 VDYSRALALPAICRVSTPPVSTCAAFGFNV 138
+D ++AL LP +C V TP S C+ FG V
Sbjct: 98 IDKAKALKLPGVCGVITPDPSLCSLFGIPV 127
>AT2G27130.1 | chr2:11595379-11596395 FORWARD LENGTH=177
Length = 176
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 52 CLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELL-SGAGDSYGIAVD 110
CL ++LN+SDC +YVQ GS +P+ CCPELAG+V+S+P C+C L GA +G+ +D
Sbjct: 40 CLVSMLNVSDCFSYVQVGSNEIKPEAACCPELAGMVQSSPECVCNLYGGGASPRFGVKLD 99
Query: 111 YSRALALPAICRVSTPPVSTCAAFGF 136
RA L IC V P S C+ GF
Sbjct: 100 KQRAEQLSTICGVKAPSPSLCSVLGF 125
>AT3G22600.1 | chr3:8006711-8007397 REVERSE LENGTH=171
Length = 170
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 51 ACLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGDSYGIAVD 110
+C AL++MS CL Y+ S + P++ CC +L+ +V+S+P CLC++L+G G GI V+
Sbjct: 27 SCTNALISMSPCLNYITGNSTS--PNQQCCNQLSRVVQSSPDCLCQVLNGGGSQLGINVN 84
Query: 111 YSRALALPAICRVSTPPVSTC 131
++AL LP C V TPPVS C
Sbjct: 85 QTQALGLPRACNVQTPPVSRC 105
>AT2G13820.1 | chr2:5774295-5776279 REVERSE LENGTH=170
Length = 169
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 52 CLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGDSYGIAVDY 111
C + +LNM+DCL++V +GS +P+ CC L +V + P CLCE +G S G+ +D
Sbjct: 27 CSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSG-SLGLTLDL 85
Query: 112 SRALALPAICRVSTPPVSTC 131
S+A +LP++C+V+ PP + C
Sbjct: 86 SKAASLPSVCKVAAPPSARC 105
>AT4G14815.1 | chr4:8505122-8505760 FORWARD LENGTH=157
Length = 156
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 49 DQACLTALLNMSDCLTYV-QNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGDSYGI 107
+C L++M+ CL+++ QN S P + CC +LA +V + CLC++L G G GI
Sbjct: 23 QSSCTNVLISMAPCLSFITQNTSL---PSQQCCNQLAHVVRYSSECLCQVLDGGGSQLGI 79
Query: 108 AVDYSRALALPAICRVSTPPVSTC 131
V+ ++ALALP C V TPP S C
Sbjct: 80 NVNETQALALPKACHVETPPASRC 103
>AT5G64080.1 | chr5:25645475-25646638 REVERSE LENGTH=183
Length = 182
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 52 CLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGDSYGIAVDY 111
C T +LNM+DCL++V +G +P+ CC L +++++ CLCE + S G+ ++
Sbjct: 43 CSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSA-SLGVTLNI 101
Query: 112 SRALALPAICRVSTPPVSTC 131
++A LPA C++ P ++TC
Sbjct: 102 TKASTLPAACKLHAPSIATC 121
>AT2G48130.1 | chr2:19685263-19685977 REVERSE LENGTH=184
Length = 183
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 49 DQACLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGDSYGIA 108
+C++ L +S CL+Y+ S P +PCC L +++S+P C+C ++ + G+
Sbjct: 27 SSSCVSTLTTLSPCLSYITGNSTT--PSQPCCSRLDSVIKSSPQCICSAVNSPIPNIGLN 84
Query: 109 VDYSRALALPAICRVSTPPVSTCAA 133
++ ++AL LP C + TPP++ C A
Sbjct: 85 INRTQALQLPNACNIQTPPLTQCNA 109
>AT4G08670.1 | chr4:5536765-5538210 REVERSE LENGTH=209
Length = 208
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 52 CLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGDSYGIAVDY 111
C T + +M DCL Y+ GS +P+K CC + +++ NP C+C L AG+ GI ++
Sbjct: 48 CSTVIYSMMDCLGYLGVGSNETKPEKSCCTGIETVLQYNPQCICAGLVSAGE-MGIELNS 106
Query: 112 SRALALPAICRVSTPP 127
+RALA P C++S P
Sbjct: 107 TRALATPKACKLSIAP 122
>AT5G09370.1 | chr5:2909450-2910475 REVERSE LENGTH=159
Length = 158
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 52 CLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGDSYGIAVDY 111
C T ++ + CL ++ G A P CC L ++++ P+CLCE L A GI ++
Sbjct: 28 CDTLVITLFPCLPFISIGGTADTPTASCCSSLKNILDTKPICLCEGLKKA--PLGIKLNV 85
Query: 112 SRALALPAICRVSTPPVSTC 131
+++ LP C+++ PPVS C
Sbjct: 86 TKSATLPVACKLNAPPVSAC 105
>AT1G03103.1 | chr1:747219-747955 FORWARD LENGTH=172
Length = 171
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 52 CLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGDS-YGIAVD 110
C L ++S CL Y+ GS + P CC + + +V+S+P CLC +++ S YG +
Sbjct: 25 CRDTLTSLSPCLYYLNGGSSS--PSWSCCRQFSTVVQSSPECLCSVVNSNESSFYGFKFN 82
Query: 111 YSRALALPAICRVSTPPVSTCAAFGFNVP 139
+ AL LP C V TP S C G NVP
Sbjct: 83 RTLALNLPTACNVQTPSPSLCNT-GGNVP 110
>AT2G44300.1 | chr2:18307468-18308286 REVERSE LENGTH=205
Length = 204
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 50 QACLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGD-SYGIA 108
+ C L+ M+ CL YVQ +++ PD CC L ++ SN CLC ++ D G+
Sbjct: 33 EECTEQLVGMATCLPYVQGQAKSPTPD--CCSGLKQVLNSNKKCLCVIIQDRNDPDLGLQ 90
Query: 109 VDYSRALALPAICRVSTPPVSTCAAF 134
++ S ALALP++C + V+ C A
Sbjct: 91 INVSLALALPSVCHAAA-DVTKCPAL 115
>AT2G44290.1 | chr2:18305418-18306202 REVERSE LENGTH=206
Length = 205
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 50 QACLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGD-SYGIA 108
+ C L+ M+ CL YVQ +A+ P CC L ++ S+ CLC ++ D G+
Sbjct: 34 EECTAQLVGMATCLPYVQG--KAKSPTPDCCSGLKQVINSDMKCLCMIIQERNDPDLGLQ 91
Query: 109 VDYSRALALPAICRVSTPPVSTCAAF 134
V+ S ALALP++C +T ++ C A
Sbjct: 92 VNVSLALALPSVCH-ATADITKCPAL 116
>AT1G36150.1 | chr1:13528257-13529470 FORWARD LENGTH=257
Length = 256
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 52 CLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGDSYGIAVDY 111
C + + +M DCL+++ GS P K CC + ++ +P CLC L + + G +D
Sbjct: 45 CSSVIYSMVDCLSFLTVGSTDPSPTKTCCVGVKTVLNYSPKCLCSALESSRE-MGFVLDD 103
Query: 112 SRALALPAICRVSTPP---VSTCAA 133
++ALA+P IC V P VST AA
Sbjct: 104 TKALAMPKICNVPIDPNCDVSTPAA 128
>AT1G55260.1 | chr1:20614663-20616158 FORWARD LENGTH=228
Length = 227
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 50 QACLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGD-SYGIA 108
+ C L+ +S C+ YV G A+ P K CC ++ + C+C L+ D GI
Sbjct: 74 EECTNQLIELSTCIPYV--GGDAKAPTKDCCAGFGQVIRKSEKCVCILVRDKDDPQLGIK 131
Query: 109 VDYSRALALPAICRVSTPPVSTCAAF 134
++ + A LP+ C ++ P ++ C +
Sbjct: 132 INATLAAHLPSACHITAPNITDCISI 157
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,543,602
Number of extensions: 80475
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 15
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)