BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0152000 Os07g0152000|J075054E23
(445 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0152000 TCP transcription factor family protein 519 e-147
Os03g0785800 Similar to Transcription factor PCF6 (Fragment) 130 2e-30
Os05g0513100 Similar to PlCYC4 protein (Fragment) 113 2e-25
Os01g0763200 Similar to Transcription factor PCF7 (Fragment) 112 5e-25
Os01g0213800 Transcription factor PCF5 102 8e-22
Os01g0755500 Similar to Transcription factor PCF7 (Fragment) 100 3e-21
Os12g0112200 91 2e-18
Os07g0137700 75 8e-14
Os09g0410500 Similar to SfCYC2 protein (Fragment) 75 9e-14
Os03g0706500 TCP transcription factor family protein 73 4e-13
Os08g0432300 73 5e-13
>Os07g0152000 TCP transcription factor family protein
Length = 445
Score = 519 bits (1337), Expect = e-147, Method: Compositional matrix adjust.
Identities = 280/445 (62%), Positives = 280/445 (62%)
Query: 1 MELAGSNNKRGRVRGPNXXXXXAGEPDAKRXXXXXXXXXXXXXXXXXXASRIYRVSRASG 60
MELAGSNNKRGRVRGPN AGEPDAKR ASRIYRVSRASG
Sbjct: 1 MELAGSNNKRGRVRGPNDDDDDAGEPDAKRHHHQLLLPWPQQQQQQHPASRIYRVSRASG 60
Query: 61 GKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKXXXXXIDKLP 120
GKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIK IDKLP
Sbjct: 61 GKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLP 120
Query: 121 SLDTASFPTNXXXXXXXXXXXXXXXXXXEREQQQQLTKSGCSSTSETXXXXXXXXXXXXX 180
SLDTASFPTN EREQQQQLTKSGCSSTSET
Sbjct: 121 SLDTASFPTNPASSAAVAAAAAPPLPHAEREQQQQLTKSGCSSTSETSKGSVLSLSRSES 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTELLTGMAAANASPA 240
FTELLTGMAAANASPA
Sbjct: 181 RVKARERARERSSAAAAAASKDAGDDAATPTAPTAAPASSQAASFTELLTGMAAANASPA 240
Query: 241 DHKQQQAWQPMTVAAATADYIGFAAAAAPHTQPRKSAAGHHSAMPHTFASPAPHLANITP 300
DHKQQQAWQPMTVAAATADYIGFAAAAAPHTQPRKSAAGHHSAMPHTFASPAPHLANITP
Sbjct: 241 DHKQQQAWQPMTVAAATADYIGFAAAAAPHTQPRKSAAGHHSAMPHTFASPAPHLANITP 300
Query: 301 IAMAPAQHFTLTPAAAEHHAEMTHYSFDHFMPVHXXXXXXXXXSTPAGGDYNLNFSMSSG 360
IAMAPAQHFTLTPAAAEHHAEMTHYSFDHFMPVH STPAGGDYNLNFSMSSG
Sbjct: 301 IAMAPAQHFTLTPAAAEHHAEMTHYSFDHFMPVHAAAAAAAAASTPAGGDYNLNFSMSSG 360
Query: 361 LVGVHSRGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLDAPNIXXXXXXXXXXXXX 420
LVGVHSRGT APLDAPNI
Sbjct: 361 LVGVHSRGTLQSNSQSHLSSHHHHHHQQQQQQQQLQRLSAPLDAPNIPFLFSPAAAPTAA 420
Query: 421 XXXXXXXXXXWDGFRHADIKEKGKH 445
WDGFRHADIKEKGKH
Sbjct: 421 DTQFAAALQLWDGFRHADIKEKGKH 445
>Os03g0785800 Similar to Transcription factor PCF6 (Fragment)
Length = 312
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 57 RASGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKXXXXXI 116
RA+GGKDRHSKVYTAKGIRDRRVRLSV+TAIQFYDLQDRLG+DQPSKAIEWLI I
Sbjct: 3 RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAI 62
Query: 117 DKLPSLDTASFPTNXXXXXXXXXXXXXXXXXXEREQQQQLTKSGCSSTSET 167
D LPSLD P +++QQQ KSGCSSTSET
Sbjct: 63 DTLPSLD----PAAFAAIPHAAADAAPTRRRSQQQQQQLSNKSGCSSTSET 109
>Os05g0513100 Similar to PlCYC4 protein (Fragment)
Length = 294
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 56/73 (76%)
Query: 50 SRIYRVSRASGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLI 109
SRI RVSR GGKDRHSKV T KG+RDRRVRLSV TAIQ YDLQDRLG QPSK ++WLI
Sbjct: 44 SRIVRVSRVFGGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLI 103
Query: 110 KXXXXXIDKLPSL 122
IDKLP L
Sbjct: 104 NAAQAEIDKLPPL 116
>Os01g0763200 Similar to Transcription factor PCF7 (Fragment)
Length = 307
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 57/73 (78%)
Query: 50 SRIYRVSRASGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLI 109
SRI RVSR GGKDRHSKV T KG+RDRRVRLSV TAIQ YDLQDRLG +QPSK ++WL+
Sbjct: 45 SRIVRVSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLL 104
Query: 110 KXXXXXIDKLPSL 122
IDKLP L
Sbjct: 105 NAARHEIDKLPPL 117
>Os01g0213800 Transcription factor PCF5
Length = 458
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 55/68 (80%)
Query: 55 VSRASGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKXXXX 114
+ R++G KDRHSKV TA+G RDRRVRLS TAIQFYD+QDRLGYD+PSKA++WLIK
Sbjct: 83 IVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKD 142
Query: 115 XIDKLPSL 122
IDKL L
Sbjct: 143 AIDKLDVL 150
>Os01g0755500 Similar to Transcription factor PCF7 (Fragment)
Length = 443
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%), Gaps = 2/72 (2%)
Query: 49 ASRIYRVSRASGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWL 108
A RI R A+G KDRHSKV TA+G+RDRRVRL+ TAI+FYD+QDRLGYD+PSKA++WL
Sbjct: 116 AGRIVRS--AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWL 173
Query: 109 IKXXXXXIDKLP 120
++ ID+LP
Sbjct: 174 MRNAKAAIDELP 185
>Os12g0112200
Length = 141
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 54/77 (70%), Gaps = 4/77 (5%)
Query: 53 YRVSRAS----GGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWL 108
+R SR + G KD+HSKV T++G+RDR VRLSV AI FYD+QDRLG DQPSKAIEW
Sbjct: 5 WRTSRVACVVAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKAIEWH 64
Query: 109 IKXXXXXIDKLPSLDTA 125
I+ ID SLD +
Sbjct: 65 IRAAAAAIDAFLSLDCS 81
>Os07g0137700
Length = 209
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 38/49 (77%)
Query: 77 RRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKXXXXXIDKLPSLDTA 125
R +RLSV TAI FYD+QDRLG DQPSKAIEWLI+ ID LPSLD +
Sbjct: 10 RSMRLSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSLDCS 58
>Os09g0410500 Similar to SfCYC2 protein (Fragment)
Length = 258
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 43/57 (75%)
Query: 63 DRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKXXXXXIDKL 119
DRHSK+ TA+G+RDRR+RLS+ A F+ LQDRLG+D+ SK ++WL+ ID+L
Sbjct: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
>Os03g0706500 TCP transcription factor family protein
Length = 388
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 62 KDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKXXXXXIDKLPS 121
KDRHSK+ TA G+RDRR+RLS+ A +F+ LQD LG+D+ SK ++WL+ I ++ S
Sbjct: 116 KDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMS 175
Query: 122 LDTASF 127
D +S
Sbjct: 176 DDASSV 181
>Os08g0432300
Length = 263
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 43/57 (75%)
Query: 63 DRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKXXXXXIDKL 119
DRHSK+ TA+G+RDRR+RLSV A F+ LQD+LG+D+ S+ +EWL+ I++L
Sbjct: 87 DRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAINRL 143
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.127 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,005,561
Number of extensions: 339383
Number of successful extensions: 1406
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1400
Number of HSP's successfully gapped: 12
Length of query: 445
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 341
Effective length of database: 11,605,545
Effective search space: 3957490845
Effective search space used: 3957490845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)