Os03g0706500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TCP transcription factor family protein.
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Os03g0706500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TCP transcription factor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.85 | 0.527 | 3.08 | 0.0378 | 0.0728 | 0.454 | -0.364 | -0.961 | 0.0456 | 12.4 | 93.01 | 1491 | -- | -- |
| 126.96 | 0.525 | 3.08 | -0.0612 | 0.0575 | 0.495 | -0.409 | -- | 0.0208 | 12.1 | 93 | 1162 | -- | -- |
| 126.32 | 0.523 | 3.08 | 0.0234 | 0.0823 | 0.44 | -- | -0.947 | 0.0387 | 10.2 | 93 | 1470 | -- | -- |
| 127.49 | 0.526 | 3.08 | -0.0667 | 0.0442 | 0.547 | -- | -- | 0.0216 | 9.87 | 93 | 1160 | -- | -- |
| 126.12 | 0.523 | 3.07 | 0.00637 | -- | 0.591 | -- | -1.04 | 0.0504 | -- | 93 | 1104 | -- | -- |
| 130.34 | 0.535 | 3.09 | -0.0367 | 0.0794 | -- | -0.365 | -- | -0.058 | 11.4 | -- | -- | -- | -- |
| 130.79 | 0.536 | 3.09 | -0.0531 | 0.0954 | -- | -- | -- | -0.0606 | 9.4 | -- | -- | -- | -- |
| 127.63 | 0.526 | 3.08 | -0.0833 | -- | 0.561 | -- | -- | 0.0223 | -- | 93 | 1157 | -- | -- |
| 127.35 | 0.526 | 3.08 | -- | 0.0115 | 0.518 | -- | -- | 0.0142 | 20.4 | 93 | 745 | -- | -- |
| 131.32 | 0.535 | 3.1 | -0.0537 | -- | -- | -- | -- | -0.0603 | -- | -- | -- | -- | -- |
| 130.87 | 0.535 | 3.09 | -- | 0.0954 | -- | -- | -- | -0.0547 | 9.45 | -- | -- | -- | -- |
| 127.36 | 0.526 | 3.08 | -- | -- | 0.506 | -- | -- | 0.0156 | -- | 93.06 | 745 | -- | -- |
| 131.4 | 0.535 | 3.1 | -- | -- | -- | -- | -- | -0.0543 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.23 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 112.65 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 21 | 1 |
| 9 | 112.65 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 31 | 116.95 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 7 | 2 |
| 35 | 117.43 | temperature | 25 | 30 | > th | dose independent | rect. | 20 | 2 |
| 39 | 117.73 | radiation | 40 | 30 | < th | dose independent | sin | 13 | NA |
| 42 | 117.91 | radiation | 30 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 58 | 117.93 | radiation | 20 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 88 | 117.98 | radiation | 40 | 90 | > th | dose independent | rect. | 15 | 1 |
| 169 | 118.06 | radiation | 20 | 10 | > th | dose independent | rect. | 16 | 1 |
| 313 | 118.82 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 336 | 119.27 | humidity | 60 | 10 | < th | dose independent | rect. | 15 | 1 |
| 362 | 119.66 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 7 | 3 |
| 363 | 119.73 | humidity | 60 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 367 | 119.90 | wind | 1 | 90 | < th | dose independent | rect. | 15 | 1 |
| 393 | 120.09 | humidity | 60 | 10 | < th | dose dependent | rect. | 15 | 4 |
| 459 | 120.37 | wind | 3 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 508 | 120.51 | wind | 3 | 10 | < th | dose independent | rect. | 16 | 1 |
| 540 | 120.64 | wind | 1 | 30 | < th | dose independent | rect. | 7 | 1 |
| 541 | 120.64 | wind | 9 | 90 | > th | dose independent | rect. | 13 | 2 |
| 558 | 120.64 | wind | 9 | 90 | > th | dose dependent | rect. | 13 | 2 |
| 560 | 120.66 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 1 |
| 572 | 120.66 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 634 | 120.88 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 18 | 4 |
| 680 | 121.23 | humidity | 80 | 10 | > th | dose dependent | rect. | 8 | 2 |
| 688 | 121.36 | radiation | 20 | 30 | < th | dose independent | sin | 13 | NA |
| 695 | 121.40 | wind | 3 | 10 | > th | dose independent | rect. | 20 | 2 |
| 724 | 121.64 | radiation | 10 | 30 | > th | dose dependent | sin | 13 | NA |
| 725 | 121.68 | humidity | 60 | 90 | > th | dose independent | sin | 13 | NA |
| 771 | 121.93 | humidity | 60 | 90 | < th | dose independent | sin | 13 | NA |
| 791 | 122.01 | humidity | 60 | 10 | < th | dose independent | sin | 12 | NA |
| 812 | 122.11 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 814 | 122.12 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 816 | 122.14 | radiation | 20 | 10 | > th | dose independent | sin | 13 | NA |
| 820 | 122.22 | humidity | 70 | 10 | < th | dose dependent | sin | 13 | NA |
| 895 | 122.51 | radiation | 40 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 919 | 122.59 | radiation | 40 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 940 | 122.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 942 | 122.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 956 | 122.73 | radiation | 20 | 10 | > th | dose independent | rect. | 13 | 4 |
| 973 | 122.74 | humidity | 80 | 90 | > th | dose dependent | rect. | 7 | 3 |