BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0706500 Os03g0706500|AK107083
(388 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357 94 9e-20
AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360 94 1e-19
AT3G18550.1 | chr3:6383769-6385604 FORWARD LENGTH=434 94 2e-19
AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421 75 9e-14
AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392 74 1e-13
AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325 72 7e-13
AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362 70 2e-12
AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366 70 2e-12
AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356 66 4e-11
AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361 62 4e-10
AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243 60 2e-09
>AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357
Length = 356
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 54/66 (81%)
Query: 115 RKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIM 174
++DRHSKI TA G RDRRMRLSL +ARKFF LQDMLGFDKASKT++WL + SK +I+++
Sbjct: 112 KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLK 171
Query: 175 SDDASS 180
A+S
Sbjct: 172 ERVAAS 177
>AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360
Length = 359
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 52/60 (86%)
Query: 115 RKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIM 174
+KDRHSKI TA G+RDRR+RLS+ +AR+FF LQDMLGFDKASKT+ WLL S+ AI+E++
Sbjct: 87 KKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVV 146
>AT3G18550.1 | chr3:6383769-6385604 FORWARD LENGTH=434
Length = 433
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 53/75 (70%)
Query: 115 RKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIM 174
R DRHSKI TA G RDRRMRLSLDVA++ F LQDMLGFDKASKTV+WLL +K I +I
Sbjct: 148 RTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIA 207
Query: 175 SDDASSVCEEDGSSS 189
+ + C G S
Sbjct: 208 TTLSHHGCFSSGDES 222
>AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421
Length = 420
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 115 RKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREI 173
RKDRHSK+ TA G RDRR+RLS A +F+ +QD LGFD+ SK V WL+ +K +I E+
Sbjct: 45 RKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDEL 103
>AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392
Length = 391
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 115 RKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREI 173
RKDRHSK+ TA G RDRR+RLS A +F+ +QD LGFD+ SK V WL+ +K+AI ++
Sbjct: 49 RKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDL 107
>AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325
Length = 324
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 45/58 (77%)
Query: 116 KDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREI 173
KDRHSK+ T+ G+RDRR+RLS+ A +F+ LQD LGFD+ SK V+WL+N + +I ++
Sbjct: 51 KDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDL 108
>AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362
Length = 361
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%)
Query: 115 RKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREI 173
RKDRHSK+ T+ G RDRR+RLS A +F+ +QD LG+D+ SK V WL+ +K AI ++
Sbjct: 29 RKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKL 87
>AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366
Length = 365
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 116 KDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMS 175
KDRHSK+ T+ G RDRR+RLS+ A +F+ LQD LG+D+ SK V+WL+ ++ +I E+ S
Sbjct: 43 KDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPS 102
>AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356
Length = 355
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 41/58 (70%)
Query: 116 KDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREI 173
KDRHSK+ T G+RDRR+RLS+ A + + LQ+ LG D+ SK V WLL+ +K I E+
Sbjct: 75 KDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDEL 132
>AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361
Length = 360
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 116 KDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREI 173
KDRHSK+ T G+RDRR+RLS+ A + + LQD LG + SK + WLL +K + ++
Sbjct: 64 KDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKL 121
>AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243
Length = 242
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 116 KDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAI 170
KDRHSK+ T G+RDRR+RLS+ A + + LQ+ LG + SK + WLL ++K +
Sbjct: 34 KDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEVAKNDV 88
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,396,155
Number of extensions: 112130
Number of successful extensions: 299
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 11
Length of query: 388
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 288
Effective length of database: 8,364,969
Effective search space: 2409111072
Effective search space used: 2409111072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)