Os01g0213800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor PCF5.
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Os01g0213800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor PCF5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 388.25 | 0.926 | 5.68 | -3.7 | 0.414 | 3.83 | -1.65 | -3.38 | -0.58 | 16 | 25.76 | 5481 | -- | -- |
| 391.42 | 0.921 | 5.58 | -2.85 | 0.418 | 3.55 | -1.63 | -- | -0.424 | 16 | 25.39 | 5475 | -- | -- |
| 395.99 | 0.927 | 5.68 | -3.68 | 0.405 | 3.84 | -- | -3.24 | -0.568 | 15.7 | 25.8 | 5461 | -- | -- |
| 398.83 | 0.93 | 5.58 | -2.86 | 0.41 | 3.55 | -- | -- | -0.416 | 15.6 | 25.54 | 5473 | -- | -- |
| 404.55 | 0.937 | 5.68 | -3.71 | -- | 3.83 | -- | -3.41 | -0.555 | -- | 25.8 | 5409 | -- | -- |
| 833.72 | 1.35 | 5.52 | -1.56 | 0.139 | -- | -2.17 | -- | -0.167 | 16.1 | -- | -- | -- | -- |
| 845.24 | 1.36 | 5.53 | -1.59 | 0.226 | -- | -- | -- | -0.179 | 19.5 | -- | -- | -- | -- |
| 407.89 | 0.941 | 5.57 | -2.85 | -- | 3.53 | -- | -- | -0.406 | -- | 25.5 | 5421 | -- | -- |
| 582.33 | 1.12 | 5.43 | -- | 0.42 | 2.7 | -- | -- | 0.203 | 16.3 | 27.61 | 5443 | -- | -- |
| 847.97 | 1.36 | 5.52 | -1.6 | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
| 912.06 | 1.41 | 5.49 | -- | 0.242 | -- | -- | -- | -0.00177 | 19 | -- | -- | -- | -- |
| 591.51 | 1.13 | 5.44 | -- | -- | 2.66 | -- | -- | 0.189 | -- | 27.6 | 5411 | -- | -- |
| 915.14 | 1.41 | 5.48 | -- | -- | -- | -- | -- | -0.00564 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 396.51 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 3 | 397.83 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 7 |
| 4 | 398.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 69 | 399.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 87 | 399.60 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 89 | 399.61 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 14 |
| 92 | 399.67 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 104 | 399.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 105 | 399.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 119 | 399.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 164 | 401.28 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 210 | 402.55 | temperature | 25 | 14400 | > th | dose dependent | sin | 14 | NA |
| 222 | 402.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 223 | 402.91 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 227 | 402.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 228 | 402.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 234 | 402.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 18 |
| 246 | 403.42 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 293 | 404.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 324 | 404.71 | temperature | 30 | 14400 | < th | dose independent | sin | 15 | NA |
| 332 | 404.80 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 334 | 404.81 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 383 | 405.48 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 472 | 406.97 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 484 | 407.25 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 500 | 407.52 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 588 | 408.58 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 623 | 409.15 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 21 |
| 654 | 409.39 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 15 |
| 665 | 409.47 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 694 | 409.71 | temperature | 25 | 14400 | > th | dose dependent | rect. | 2 | 22 |
| 697 | 409.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 698 | 409.76 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 725 | 409.99 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 798 | 410.61 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 801 | 410.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 832 | 410.99 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 838 | 411.10 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 888 | 411.76 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 15 |
| 889 | 411.76 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 896 | 411.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 21 |
| 898 | 411.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 917 | 411.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 21 |
| 924 | 411.80 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 19 |
| 937 | 411.81 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 17 |
| 949 | 411.81 | temperature | 30 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 951 | 411.82 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |