BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0213800 Os01g0213800|AB071805
(458 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0213800 Transcription factor PCF5 548 e-156
Os01g0755500 Similar to Transcription factor PCF7 (Fragment) 137 2e-32
Os03g0785800 Similar to Transcription factor PCF6 (Fragment) 102 8e-22
Os07g0152000 TCP transcription factor family protein 101 9e-22
Os01g0763200 Similar to Transcription factor PCF7 (Fragment) 90 4e-18
Os05g0513100 Similar to PlCYC4 protein (Fragment) 89 5e-18
Os12g0112200 77 4e-14
Os09g0410500 Similar to SfCYC2 protein (Fragment) 76 4e-14
Os08g0432300 70 3e-12
Os03g0706500 TCP transcription factor family protein 70 3e-12
>Os01g0213800 Transcription factor PCF5
Length = 458
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 311/430 (72%), Positives = 311/430 (72%)
Query: 1 MGDAXXXXXXXXXXFQPQLLSFGGVGHHHHLHQFTAQPQPPAASHTRGRGGGGEIVPATT 60
MGDA FQPQLLSFGGVGHHHHLHQFTAQPQPPAASHTRGRGGGGEIVPATT
Sbjct: 1 MGDAGGHSHHHQHGFQPQLLSFGGVGHHHHLHQFTAQPQPPAASHTRGRGGGGEIVPATT 60
Query: 61 TPRSRXXXXXXXXEIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDV 120
TPRSR EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDV
Sbjct: 61 TPRSRGGGGGGGGEIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDV 120
Query: 121 QDRLGYDRPSKAVDWLIKNAKDAIDKLDVLPAWQPTXXXXXXXXXXXPPSSSTHPDSAEN 180
QDRLGYDRPSKAVDWLIKNAKDAIDKLDVLPAWQPT PPSSSTHPDSAEN
Sbjct: 121 QDRLGYDRPSKAVDWLIKNAKDAIDKLDVLPAWQPTAGGAGAGNAAAPPSSSTHPDSAEN 180
Query: 181 SDDQAQAITVAHTAFDFAGGGSGGTSFLPPSLDSDAIADTIKSFFPMXXXXXXXXXXXXX 240
SDDQAQAITVAHTAFDFAGGGSGGTSFLPPSLDSDAIADTIKSFFPM
Sbjct: 181 SDDQAQAITVAHTAFDFAGGGSGGTSFLPPSLDSDAIADTIKSFFPMGGTAGGEASSSTT 240
Query: 241 XXXXXXXXFQSYTPDLLSRTGXXXXXXXXXXXXXPDPMFXXXXXXXXXXXXXXXXXXXXA 300
FQSYTPDLLSRTG PDPMF A
Sbjct: 241 AAQSSAMGFQSYTPDLLSRTGSQSQELRLSLQSLPDPMFHHQQHRHGGGGGGGNGTTQQA 300
Query: 301 LFSGAANYSFGGGAMWATEQQAQNQRMLPWNVPDPGGGGGAAYLFNVXXXXXXXXXXXXX 360
LFSGAANYSFGGGAMWATEQQAQNQRMLPWNVPDPGGGGGAAYLFNV
Sbjct: 301 LFSGAANYSFGGGAMWATEQQAQNQRMLPWNVPDPGGGGGAAYLFNVSQQAAHMQAAAAA 360
Query: 361 XXXXXXXFFFQRGPLQSSNQPSERGWPETVEADNQMSHHQGGLSPSVXXXXXXXXXXXXX 420
FFFQRGPLQSSNQPSERGWPETVEADNQMSHHQGGLSPSV
Sbjct: 361 LGGHQSQFFFQRGPLQSSNQPSERGWPETVEADNQMSHHQGGLSPSVSAAIGFAAPGIGF 420
Query: 421 XXXRLPARIQ 430
RLPARIQ
Sbjct: 421 SGFRLPARIQ 430
>Os01g0755500 Similar to Transcription factor PCF7 (Fragment)
Length = 443
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 109/197 (55%), Gaps = 40/197 (20%)
Query: 76 VAVQGGHIVRST-GRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVD 134
A G IVRS GRKDRHSKVCTARG RDRRVRL+AHTAI+FYDVQDRLGYDRPSKAVD
Sbjct: 112 TAFGAGRIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVD 171
Query: 135 WLIKNAKDAIDKLDVLPAWQPTXXXXXXXXXXXPPSSSTHPDSAENSDDQAQAITVA-HT 193
WL++NAK AID+L P + P A S +Q +A A T
Sbjct: 172 WLMRNAKAAIDEL--------------------PDRAEAPPPPAAASTEQPEATEQATST 211
Query: 194 AFDFAGGGSGGT----------SFLPPSLDSDAIADTIKSFFPMXXXXXXXXXXXXXXXX 243
++ F G +GGT SFLP SL +D ++D++KS FP
Sbjct: 212 SYGF-GNTTGGTMTSAASAAAGSFLPHSLGADRVSDSVKSLFPS-------SSTASGAAS 263
Query: 244 XXXXXFQSYTPDLLSRT 260
++ PDLLSRT
Sbjct: 264 AGHDEYRGSPPDLLSRT 280
>Os03g0785800 Similar to Transcription factor PCF6 (Fragment)
Length = 312
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 55/67 (82%)
Query: 84 VRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDA 143
VR+TG KDRHSKV TA+G RDRRVRLS TAIQFYD+QDRLG+D+PSKA++WLI A A
Sbjct: 2 VRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPA 61
Query: 144 IDKLDVL 150
ID L L
Sbjct: 62 IDTLPSL 68
>Os07g0152000 TCP transcription factor family protein
Length = 445
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 57/68 (83%)
Query: 83 IVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKD 142
+ R++G KDRHSKV TA+G RDRRVRLS TAIQFYD+QDRLGYD+PSKA++WLIK A
Sbjct: 55 VSRASGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAA 114
Query: 143 AIDKLDVL 150
AIDKL L
Sbjct: 115 AIDKLPSL 122
>Os01g0763200 Similar to Transcription factor PCF7 (Fragment)
Length = 307
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 49/65 (75%)
Query: 83 IVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKD 142
+ R G KDRHSKV T +G RDRRVRLS TAIQ YD+QDRLG ++PSK VDWL+ A+
Sbjct: 50 VSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARH 109
Query: 143 AIDKL 147
IDKL
Sbjct: 110 EIDKL 114
>Os05g0513100 Similar to PlCYC4 protein (Fragment)
Length = 294
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 48/65 (73%)
Query: 83 IVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKD 142
+ R G KDRHSKV T +G RDRRVRLS TAIQ YD+QDRLG +PSK VDWLI A+
Sbjct: 49 VSRVFGGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQA 108
Query: 143 AIDKL 147
IDKL
Sbjct: 109 EIDKL 113
>Os12g0112200
Length = 141
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 45/58 (77%)
Query: 88 GRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAID 145
G KD+HSKV T+RG RDR VRLS AI FYD+QDRLG D+PSKA++W I+ A AID
Sbjct: 16 GEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKAIEWHIRAAAAAID 73
>Os09g0410500 Similar to SfCYC2 protein (Fragment)
Length = 258
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 47/64 (73%)
Query: 89 RKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLD 148
R DRHSK+ TA+G RDRR+RLS A F+ +QDRLG+D+ SK VDWL+ +K AID+L
Sbjct: 77 RTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLA 136
Query: 149 VLPA 152
P+
Sbjct: 137 ADPS 140
>Os08g0432300
Length = 263
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 89 RKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKL 147
R DRHSK+ TA+G RDRR+RLS A F+ +QD+LG+D+ S+ V+WL+ +K AI++L
Sbjct: 85 RTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAINRL 143
>Os03g0706500 TCP transcription factor family protein
Length = 388
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 89 RKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKL 147
RKDRHSK+ TA G RDRR+RLS A +F+ +QD LG+D+ SK V WL+ +K AI ++
Sbjct: 115 RKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREI 173
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,710,768
Number of extensions: 576877
Number of successful extensions: 2942
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 2932
Number of HSP's successfully gapped: 10
Length of query: 458
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 354
Effective length of database: 11,605,545
Effective search space: 4108362930
Effective search space used: 4108362930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)