Os01g0755500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor PCF7 (Fragment).
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Os01g0755500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor PCF7 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 303.45 | 0.818 | 7.3 | -0.716 | 2.28 | 0.848 | -0.909 | 6.42 | -0.68 | 21.8 | 10.69 | 1634 | -- | -- |
| 318.15 | 0.831 | 7.45 | -2.1 | 2.27 | 0.964 | -0.975 | -- | -0.911 | 21.7 | 26.1 | 3079 | -- | -- |
| 306.59 | 0.816 | 7.3 | -0.673 | 2.29 | 0.834 | -- | 6.43 | -0.677 | 21.8 | 10.02 | 1602 | -- | -- |
| 321.37 | 0.835 | 7.45 | -2.12 | 2.27 | 0.895 | -- | -- | -0.913 | 21.7 | 26.1 | 2973 | -- | -- |
| 544.99 | 1.09 | 7.37 | -1.59 | -- | 2.57 | -- | 5.54 | -1.04 | -- | 14.41 | 777 | -- | -- |
| 350.83 | 0.878 | 7.44 | -1.84 | 2.31 | -- | -0.912 | -- | -0.889 | 21.8 | -- | -- | -- | -- |
| 354.03 | 0.881 | 7.44 | -1.81 | 2.31 | -- | -- | -- | -0.887 | 21.8 | -- | -- | -- | -- |
| 500.15 | 1.04 | 7.42 | -2.29 | -- | 2.45 | -- | -- | -1.1 | -- | 24.33 | 797 | -- | -- |
| 428.46 | 0.964 | 7.38 | -- | 2.28 | 0.523 | -- | -- | -0.602 | 21.7 | 28.9 | 2976 | -- | -- |
| 673.75 | 1.21 | 7.38 | -1.78 | -- | -- | -- | -- | -0.889 | -- | -- | -- | -- | -- |
| 440.2 | 0.981 | 7.4 | -- | 2.31 | -- | -- | -- | -0.686 | 21.8 | -- | -- | -- | -- |
| 639.58 | 1.18 | 7.37 | -- | -- | 2 | -- | -- | -0.829 | -- | 24.5 | 771 | -- | -- |
| 757.72 | 1.28 | 7.34 | -- | -- | -- | -- | -- | -0.691 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 289.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 5 | 290.94 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 16 | 292.65 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 17 | 292.77 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 18 | 292.78 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 27 | 293.24 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 31 | 293.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 38 | 293.83 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 40 | 294.08 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 47 | 294.95 | radiation | 1 | 4320 | > th | dose independent | rect. | 14 | 15 |
| 48 | 295.08 | radiation | 1 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 58 | 295.11 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 62 | 295.32 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 66 | 295.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 69 | 295.79 | radiation | 1 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 70 | 295.79 | radiation | 1 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 82 | 295.86 | radiation | 1 | 4320 | < th | dose independent | rect. | 14 | 9 |
| 84 | 295.86 | radiation | 1 | 4320 | < th | dose independent | rect. | 14 | 13 |
| 112 | 296.50 | radiation | 1 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 113 | 296.54 | temperature | 15 | 720 | > th | dose independent | rect. | 19 | 12 |
| 115 | 296.56 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 139 | 296.85 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 143 | 296.93 | radiation | 1 | 4320 | > th | dose independent | sin | 18 | NA |
| 154 | 297.00 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 156 | 297.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 158 | 297.08 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 160 | 297.09 | temperature | 15 | 720 | > th | dose independent | rect. | 19 | 16 |
| 162 | 297.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 163 | 297.13 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 20 |
| 164 | 297.14 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 10 |
| 200 | 297.24 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 207 | 297.41 | radiation | 1 | 4320 | < th | dose dependent | rect. | 14 | 9 |
| 229 | 297.52 | radiation | 1 | 4320 | < th | dose independent | sin | 18 | NA |
| 233 | 297.55 | radiation | 1 | 4320 | < th | dose dependent | rect. | 14 | 13 |
| 234 | 297.56 | radiation | 1 | 4320 | < th | dose independent | rect. | 9 | 14 |
| 235 | 297.56 | radiation | 1 | 4320 | < th | dose independent | rect. | 9 | 18 |
| 237 | 297.57 | radiation | 1 | 4320 | < th | dose independent | rect. | 9 | 10 |
| 247 | 297.59 | radiation | 1 | 4320 | < th | dose independent | rect. | 9 | 12 |
| 250 | 297.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 262 | 297.67 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 287 | 297.76 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 290 | 297.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 310 | 297.85 | wind | 9 | 43200 | > th | dose dependent | sin | 11 | NA |
| 395 | 298.85 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 407 | 298.91 | wind | 9 | 43200 | > th | dose independent | sin | 10 | NA |
| 446 | 299.23 | radiation | 1 | 4320 | < th | dose dependent | sin | 18 | NA |
| 478 | 299.41 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 9 | 14 |
| 483 | 299.43 | temperature | 10 | 4320 | > th | dose dependent | rect. | 16 | 9 |
| 487 | 299.44 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 21 | NA |
| 491 | 299.45 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 512 | 299.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 551 | 299.78 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 596 | 300.11 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 659 | 300.45 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 5 | 18 |
| 668 | 300.51 | wind | 9 | 43200 | < th | dose independent | sin | 10 | NA |
| 704 | 300.69 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 712 | 300.73 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 720 | 300.75 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 738 | 300.84 | radiation | 10 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 768 | 300.91 | temperature | 10 | 4320 | > th | dose dependent | sin | 15 | NA |
| 810 | 301.06 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 914 | 301.53 | temperature | 30 | 4320 | < th | dose dependent | sin | 15 | NA |
| 1000 | 301.82 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 8 |