BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0755500 Os01g0755500|AB071807
(443 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0755500 Similar to Transcription factor PCF7 (Fragment) 628 e-180
Os01g0213800 Transcription factor PCF5 122 5e-28
Os07g0152000 TCP transcription factor family protein 99 5e-21
Os03g0785800 Similar to Transcription factor PCF6 (Fragment) 98 1e-20
Os05g0513100 Similar to PlCYC4 protein (Fragment) 92 8e-19
Os01g0763200 Similar to Transcription factor PCF7 (Fragment) 90 3e-18
Os12g0112200 84 2e-16
Os03g0706500 TCP transcription factor family protein 75 9e-14
Os09g0410500 Similar to SfCYC2 protein (Fragment) 74 2e-13
Os08g0432300 68 2e-11
>Os01g0755500 Similar to Transcription factor PCF7 (Fragment)
Length = 443
Score = 628 bits (1619), Expect = e-180, Method: Compositional matrix adjust.
Identities = 323/443 (72%), Positives = 323/443 (72%)
Query: 1 SCFNFRSSPFRLTVGERELKLEEDKNQLSKGLDPWTSNPTASASTLHYLLQEKERAXXXX 60
SCFNFRSSPFRLTVGERELKLEEDKNQLSKGLDPWTSNPTASASTLHYLLQEKERA
Sbjct: 1 SCFNFRSSPFRLTVGERELKLEEDKNQLSKGLDPWTSNPTASASTLHYLLQEKERAQQAH 60
Query: 61 XXXXXXXXXXGFGSFLQHRIRQPASRXXXXXXXXXXXXXXXXESTPVEALATAFGAGRIV 120
GFGSFLQHRIRQPASR ESTPVEALATAFGAGRIV
Sbjct: 61 EQLQIYQQQQGFGSFLQHRIRQPASRGPGGGGGGGDGGGSSGESTPVEALATAFGAGRIV 120
Query: 121 RSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAA 180
RSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAA
Sbjct: 121 RSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAA 180
Query: 181 IDELPDRXXXXXXXXXXXXXXXXXXXXXXXXSYGFGNXXXXXXXXXXXXXXXXFLPHSLG 240
IDELPDR SYGFGN FLPHSLG
Sbjct: 181 IDELPDRAEAPPPPAAASTEQPEATEQATSTSYGFGNTTGGTMTSAASAAAGSFLPHSLG 240
Query: 241 ADRVSDSVKSLFPXXXXXXXXXXXXHDEYRGSPPDLLSRTTSNQQPQELCLTLQSNQHQI 300
ADRVSDSVKSLFP HDEYRGSPPDLLSRTTSNQQPQELCLTLQSNQHQI
Sbjct: 241 ADRVSDSVKSLFPSSSTASGAASAGHDEYRGSPPDLLSRTTSNQQPQELCLTLQSNQHQI 300
Query: 301 FSHVSSNHHGMISSAGVPGWPDHSQRMQAWHAPENSTXXXXXXXXXXXYMFAMPSRQGLD 360
FSHVSSNHHGMISSAGVPGWPDHSQRMQAWHAPENST YMFAMPSRQGLD
Sbjct: 301 FSHVSSNHHGMISSAGVPGWPDHSQRMQAWHAPENSTGDGRGGGNGDGYMFAMPSRQGLD 360
Query: 361 QSQLFSHGEPLQSSGRGWASARAWLDPLAVAAIHHQPSTMAXXXXXXXXXXXXXXXXXXX 420
QSQLFSHGEPLQSSGRGWASARAWLDPLAVAAIHHQPSTMA
Sbjct: 361 QSQLFSHGEPLQSSGRGWASARAWLDPLAVAAIHHQPSTMAAGQVGFGHLVGGAGGGGGF 420
Query: 421 XXXXXXXXQRLEGEEEHGSEVIR 443
QRLEGEEEHGSEVIR
Sbjct: 421 MGFLAPAAQRLEGEEEHGSEVIR 443
>Os01g0213800 Transcription factor PCF5
Length = 458
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 64/73 (87%), Gaps = 1/73 (1%)
Query: 112 TAFGAGRIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVD 171
A G IVRS GRKDRHSKVCTARG RDRRVRL+AHTAI+FYDVQDRLGYDRPSKAVD
Sbjct: 76 VAVQGGHIVRST-GRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVD 134
Query: 172 WLMRNAKAAIDEL 184
WL++NAK AID+L
Sbjct: 135 WLIKNAKDAIDKL 147
>Os07g0152000 TCP transcription factor family protein
Length = 445
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 61/72 (84%), Gaps = 2/72 (2%)
Query: 116 AGRIVRS--AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWL 173
A RI R A+G KDRHSKV TA+G+RDRRVRL+ TAI+FYD+QDRLGYD+PSKA++WL
Sbjct: 49 ASRIYRVSRASGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWL 108
Query: 174 MRNAKAAIDELP 185
++ A AAID+LP
Sbjct: 109 IKAAAAAIDKLP 120
>Os03g0785800 Similar to Transcription factor PCF6 (Fragment)
Length = 312
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 53/63 (84%)
Query: 123 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAID 182
A G KDRHSKV TA+G+RDRRVRL+ TAI+FYD+QDRLG+D+PSKA++WL+ A AID
Sbjct: 4 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAID 63
Query: 183 ELP 185
LP
Sbjct: 64 TLP 66
>Os05g0513100 Similar to PlCYC4 protein (Fragment)
Length = 294
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
Query: 118 RIVRSA--AGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMR 175
RIVR + G KDRHSKV T +GLRDRRVRL+ TAI+ YD+QDRLG +PSK VDWL+
Sbjct: 45 RIVRVSRVFGGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIN 104
Query: 176 NAKAAIDELP 185
A+A ID+LP
Sbjct: 105 AAQAEIDKLP 114
>Os01g0763200 Similar to Transcription factor PCF7 (Fragment)
Length = 307
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
Query: 118 RIVRSA--AGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMR 175
RIVR + G KDRHSKV T +GLRDRRVRL+ TAI+ YD+QDRLG ++PSK VDWL+
Sbjct: 46 RIVRVSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLN 105
Query: 176 NAKAAIDELP 185
A+ ID+LP
Sbjct: 106 AARHEIDKLP 115
>Os12g0112200
Length = 141
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 54/73 (73%)
Query: 110 LATAFGAGRIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKA 169
+A A+ R+ AG KD+HSKV T+RGLRDR VRL+ AI FYD+QDRLG D+PSKA
Sbjct: 1 MAAAWRTSRVACVVAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKA 60
Query: 170 VDWLMRNAKAAID 182
++W +R A AAID
Sbjct: 61 IEWHIRAAAAAID 73
>Os03g0706500 TCP transcription factor family protein
Length = 388
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 114 FGAGRIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWL 173
FG +AA RKDRHSK+ TA G+RDRR+RL+ A +F+ +QD LG+D+ SK V WL
Sbjct: 103 FGVDGAAAAAAARKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWL 162
Query: 174 MRNAKAAIDEL 184
+ +KAAI E+
Sbjct: 163 LNMSKAAIREI 173
>Os09g0410500 Similar to SfCYC2 protein (Fragment)
Length = 258
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 126 RKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDEL 184
R DRHSK+ TA+G+RDRR+RL+ A F+ +QDRLG+D+ SK VDWL+ +K AID L
Sbjct: 77 RTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
>Os08g0432300
Length = 263
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 45/59 (76%)
Query: 126 RKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDEL 184
R DRHSK+ TA+G+RDRR+RL+ A F+ +QD+LG+D+ S+ V+WL+ +K AI+ L
Sbjct: 85 RTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAINRL 143
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.130 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,233,434
Number of extensions: 354375
Number of successful extensions: 829
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 826
Number of HSP's successfully gapped: 10
Length of query: 443
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 339
Effective length of database: 11,605,545
Effective search space: 3934279755
Effective search space used: 3934279755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)