Os01g0763200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor PCF7 (Fragment).
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Os01g0763200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor PCF7 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.33 | 0.365 | 12.1 | -0.893 | 0.713 | 0.639 | 0.177 | 1.16 | -0.554 | 1.77 | 1.142 | 17364 | -- | -- |
| 61.46 | 0.365 | 12.1 | -0.904 | 0.662 | 0.431 | 0.397 | -- | -0.581 | 1.82 | 20.23 | 25847 | -- | -- |
| 57.15 | 0.352 | 12.2 | -0.744 | 0.709 | 0.445 | -- | 1.59 | -0.517 | 1.81 | 9.085 | 27396 | -- | -- |
| 61.42 | 0.365 | 12.1 | -0.907 | 0.665 | 0.432 | -- | -- | -0.582 | 1.78 | 20.16 | 25744 | -- | -- |
| 75.59 | 0.407 | 12.1 | -0.994 | -- | -0.488 | -- | 0.208 | -0.458 | -- | 9.085 | 27396 | -- | -- |
| 68.95 | 0.389 | 12.1 | -0.952 | 0.716 | -- | 0.207 | -- | -0.434 | 1.85 | -- | -- | -- | -- |
| 69.1 | 0.389 | 12.1 | -0.958 | 0.715 | -- | -- | -- | -0.435 | 1.76 | -- | -- | -- | -- |
| 75.86 | 0.407 | 12.1 | -0.978 | -- | -0.487 | -- | -- | -0.454 | -- | 9.085 | 27396 | -- | -- |
| 76.35 | 0.407 | 12.1 | -- | 0.641 | 0.647 | -- | -- | -0.4 | 2.06 | 49.8 | 24255 | -- | -- |
| 100.19 | 0.468 | 12.1 | -0.929 | -- | -- | -- | -- | -0.418 | -- | -- | -- | -- | -- |
| 93.28 | 0.452 | 12.1 | -- | 0.698 | -- | -- | -- | -0.328 | 1.72 | -- | -- | -- | -- |
| 101.01 | 0.47 | 12.1 | -- | -- | -0.461 | -- | -- | -0.344 | -- | 9.085 | 27396 | -- | -- |
| 122.93 | 0.518 | 12.1 | -- | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.45 | humidity | 90 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 2 | 54.67 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 7 | 54.83 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 21 | 55.36 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 28 | 55.53 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 29 | 55.55 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 36 | 55.80 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 43 | 55.87 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 61 | 56.07 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 64 | 56.10 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 76 | 56.25 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 85 | 56.30 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 102 | 56.35 | humidity | 80 | 43200 | > th | dose independent | sin | 17 | NA |
| 103 | 56.35 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 108 | 56.37 | humidity | 80 | 43200 | < th | dose independent | sin | 17 | NA |
| 126 | 56.41 | humidity | 90 | 43200 | < th | dose dependent | rect. | 16 | 7 |
| 130 | 56.42 | humidity | 80 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 131 | 56.42 | humidity | 90 | 43200 | < th | dose dependent | rect. | 16 | 5 |
| 142 | 56.45 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 147 | 56.46 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 162 | 56.49 | humidity | 80 | 43200 | < th | dose dependent | rect. | 15 | 13 |
| 241 | 56.57 | humidity | 60 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 255 | 56.59 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 295 | 56.63 | humidity | 90 | 43200 | < th | dose dependent | sin | 15 | NA |
| 321 | 56.65 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 380 | 56.69 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 19 |
| 392 | 56.70 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 425 | 56.72 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 596 | 56.83 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 621 | 56.84 | humidity | 80 | 43200 | > th | dose independent | rect. | 7 | 17 |
| 663 | 56.86 | humidity | 90 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 675 | 56.87 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 19 |
| 792 | 56.92 | humidity | 50 | 43200 | > th | dose dependent | sin | 17 | NA |