BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0763200 Os01g0763200|AK071964
(307 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361 141 5e-34
AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356 140 6e-34
AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243 132 3e-31
AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325 114 9e-26
AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366 112 3e-25
AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392 96 3e-20
AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421 91 5e-19
AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362 91 1e-18
AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360 75 5e-14
AT3G18550.1 | chr3:6383769-6385604 FORWARD LENGTH=434 72 4e-13
AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357 67 1e-11
>AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361
Length = 360
Score = 141 bits (355), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 66/81 (81%), Positives = 73/81 (90%)
Query: 40 SAQTESRIVRVSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKV 99
SA RIVRVSR FGGKDRHSKV TV+GLRDRR+RLSVPTAIQLYDLQDRLGL+QPSKV
Sbjct: 47 SAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKV 106
Query: 100 VDWLLNAARHEIDKLPPLQFP 120
+DWLL AA+ ++DKLPPLQFP
Sbjct: 107 IDWLLEAAKDDVDKLPPLQFP 127
>AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356
Length = 355
Score = 140 bits (354), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 83/106 (78%)
Query: 25 LARKHTAAVATSRQWSAQTESRIVRVSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQL 84
+ ++ T+ ++S W + RIVRVSR FGGKDRHSKV T++GLRDRRVRLSVPTAIQL
Sbjct: 43 IKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQL 102
Query: 85 YDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDHLCMGHH 130
YDLQ+RLG++QPSK VDWLL+AA+ EID+LPPL P++ HH
Sbjct: 103 YDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSIFNHH 148
>AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243
Length = 242
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/79 (77%), Positives = 71/79 (89%)
Query: 46 RIVRVSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLN 105
RIVRVSR FGGKDRHSKV TV+GLRDRR+RLSV TAIQ+YDLQ+RLGL+QPSKV+DWLL
Sbjct: 23 RIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLE 82
Query: 106 AARHEIDKLPPLQFPPQDH 124
A++++D LPPLQFPP H
Sbjct: 83 VAKNDVDLLPPLQFPPGFH 101
>AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325
Length = 324
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query: 37 RQWSAQTESRIVRVSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQP 96
R W+ + SRI+RVSR GGKDRHSKV T KGLRDRR+RLSV TAIQ YDLQDRLG +QP
Sbjct: 32 RNWNNPS-SRIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQP 90
Query: 97 SKVVDWLLNAARHEIDKLPPL 117
SK V+WL+NAA I LP L
Sbjct: 91 SKAVEWLINAASDSITDLPLL 111
>AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366
Length = 365
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
Query: 45 SRIVRVSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLL 104
SRI+RVSR GGKDRHSKV T KG RDRRVRLSV TA+Q YDLQDRLG +QPSK V+WL+
Sbjct: 31 SRIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLI 90
Query: 105 NAARHEIDKLPPLQ---FPPQD 123
AA I +LP L FP D
Sbjct: 91 KAAEDSISELPSLNNTHFPTDD 112
>AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392
Length = 391
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 52/72 (72%), Gaps = 2/72 (2%)
Query: 50 VSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARH 109
+ R G KDRHSKV T KG RDRRVRLS PTAIQ YD+QDRLG ++PSK VDWL+ A+
Sbjct: 43 IVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKS 102
Query: 110 EIDKLPPLQFPP 121
ID L Q PP
Sbjct: 103 AIDDL--AQLPP 112
>AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421
Length = 420
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 52/72 (72%), Gaps = 2/72 (2%)
Query: 50 VSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARH 109
+ R G KDRHSKV T KG RDRRVRLS TAIQ YD+QDRLG ++PSK VDWL+ A+
Sbjct: 39 IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKT 98
Query: 110 EIDKLPPLQFPP 121
ID+L + PP
Sbjct: 99 SIDEL--AELPP 108
>AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362
Length = 361
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 49/65 (75%)
Query: 50 VSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARH 109
+ R G KDRHSKV T KG RDRRVRLS TAIQ YD+QDRLG ++PSK VDWL+ A+
Sbjct: 23 IIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKT 82
Query: 110 EIDKL 114
IDKL
Sbjct: 83 AIDKL 87
>AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360
Length = 359
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 44/58 (75%)
Query: 57 KDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKL 114
KDRHSK++T +G+RDRRVRLS+ A Q +DLQD LG ++ SK +DWLL +R I ++
Sbjct: 88 KDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEV 145
>AT3G18550.1 | chr3:6383769-6385604 FORWARD LENGTH=434
Length = 433
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 43/57 (75%)
Query: 58 DRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKL 114
DRHSK+KT KG RDRR+RLS+ A +L+ LQD LG ++ SK V+WLL A+ EI K+
Sbjct: 150 DRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKI 206
>AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357
Length = 356
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 47/70 (67%)
Query: 45 SRIVRVSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLL 104
S+ V+ R +DRHSK+ T +G RDRR+RLS+ A + +DLQD LG ++ SK ++WL
Sbjct: 101 SQEVQWRRTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLF 160
Query: 105 NAARHEIDKL 114
+ ++ I +L
Sbjct: 161 SKSKTSIKQL 170
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,175,500
Number of extensions: 187149
Number of successful extensions: 418
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 11
Length of query: 307
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 209
Effective length of database: 8,419,801
Effective search space: 1759738409
Effective search space used: 1759738409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)